RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 NIPA2Q8N8Q9 360 aa12.59□□□□□ -0.39
SF3B3-208ENST00000567250 BHMTQ93088 406 aa12.59□□□□□ -0.39
SF3B3-208ENST00000567250 ARHGEF26Q96DR7 871 aa12.59□□□□□ -0.39
SF3B3-208ENST00000567250 C1orf74Q96LT6 269 aa12.59□□□□□ -0.39
SF3B3-208ENST00000567250 PRICKLE1Q96MT3 831 aaPredicted RBP12.59□□□□□ -0.39
SF3B3-208ENST00000567250 RPRD1AQ96P16 312 aaPredicted RBP12.59□□□□□ -0.39
SF3B3-208ENST00000567250 PACSIN1Q9BY11 444 aa12.59□□□□□ -0.39
SF3B3-208ENST00000567250 ADAM33Q9BZ11 813 aa12.59□□□□□ -0.39
SF3B3-208ENST00000567250 FOXQ1Q9C009 403 aa12.59□□□□□ -0.39
SF3B3-208ENST00000567250 ARHGEF4Q9NR80 690 aa12.59□□□□□ -0.39
SF3B3-208ENST00000567250 SIT1Q9Y3P8 196 aa12.59□□□□□ -0.39
SF3B3-208ENST00000567250 EPN1Q9Y6I3 576 aaPredicted RBP12.59□□□□□ -0.39
SF3B3-208ENST00000567250 A0A1B0GVM2 712 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 TCAF2A6NFQ2 919 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 GFRA2O00451 464 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 PRPSAP2O60256 369 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 TSPAN3O60637 253 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 TBL1XO60907 577 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 PDGFBP01127 241 aaPredicted RBP12.58□□□□□ -0.4
SF3B3-208ENST00000567250 CD72P21854 359 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 HOXD9P28356 352 aaPredicted RBP12.58□□□□□ -0.4
SF3B3-208ENST00000567250 PCK1P35558 622 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 GRIA2P42262 883 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 MAGEA1P43355 309 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 RPS9P46781 194 aaKnown RBP12.58□□□□□ -0.4
SF3B3-208ENST00000567250 ATXN1P54253 815 aaKnown RBP12.58□□□□□ -0.4
SF3B3-208ENST00000567250 OGDHQ02218 1023 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 KDSRQ06136 332 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 GAB4Q2WGN9 574 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 SH3PXD2AQ5TCZ1 1133 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 SCYL2Q6P3W7 929 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 RFWD3Q6PCD5 774 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 C12orf40Q86WS4 652 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 MFN1Q8IWA4 741 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 CCDC105Q8IYK2 499 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 TERB1Q8NA31 727 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 CHFRQ96EP1 664 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 CALR3Q96L12 384 aaKnown RBP12.58□□□□□ -0.4
SF3B3-208ENST00000567250 PRMT1Q99873 361 aaKnown RBP12.58□□□□□ -0.4
SF3B3-208ENST00000567250 SIK2Q9H0K1 926 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 PLK2Q9NYY3 685 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 XPO7Q9UIA9 1087 aaKnown RBP12.58□□□□□ -0.4
SF3B3-208ENST00000567250 VANGL2Q9ULK5 521 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 HS3ST4Q9Y661 456 aa12.58□□□□□ -0.4
SF3B3-208ENST00000567250 F5P12259 2224 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 GOLGA6L7A0A1B0GV03 622 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 FAM86C2PA6NEL3 165 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 FAM170BA6NMN3 283 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 ARHGAP6O43182 974 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 LRCH4O75427 683 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 MTA2O94776 668 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 LUC7L3O95232 432 aaKnown RBP12.57□□□□□ -0.4
SF3B3-208ENST00000567250 KAT7O95251 611 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 HTR7P34969 479 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 ADRA1BP35368 520 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 GALK1P51570 392 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 ZNF135P52742 658 aaPredicted RBP12.57□□□□□ -0.4
SF3B3-208ENST00000567250 OXCT1P55809 520 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 NRG1Q02297 640 aaPredicted RBP12.57□□□□□ -0.4
SF3B3-208ENST00000567250 ZNF252P-AS1Q0IIN9 211 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 AUHQ13825 339 aaKnown RBP12.57□□□□□ -0.4
SF3B3-208ENST00000567250 CCINQ13939 588 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 EIF4HQ15056 248 aaKnown RBP12.57□□□□□ -0.4
SF3B3-208ENST00000567250 FBXL22Q6P050 247 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 CHST9Q7L1S5 443 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 ANKS1BQ7Z6G8 1248 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 KIAA1328Q86T90 577 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 TMEM139Q8IV31 216 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 PSTKQ8IV42 348 aaKnown RBP12.57□□□□□ -0.4
SF3B3-208ENST00000567250 AHI1Q8N157 1196 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 NAT16Q8N8M0 369 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 WFIKKN2Q8TEU8 576 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 PPP1R9BQ96SB3 815 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 EPAS1Q99814 870 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 OSBPL2Q9H1P3 480 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 SLC27A6Q9Y2P4 619 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 PCDHA13Q9Y5I0 950 aa12.57□□□□□ -0.4
SF3B3-208ENST00000567250 A0A0A6YYK5 440 aaPredicted RBP12.56□□□□□ -0.4
SF3B3-208ENST00000567250 SHISA7A6NL88 538 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 E9PAM4 449 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 H0Y626 953 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 CLDN11O75508 207 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 MOCS3O95396 460 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 MAN1A1P33908 653 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 ARHGAP25P42331 645 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 VAV2P52735 878 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 CDH4P55283 916 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 RPS24P62847 133 aaKnown RBP12.56□□□□□ -0.4
SF3B3-208ENST00000567250 TCEAL1Q15170 157 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 HADHQ16836 314 aaKnown RBP12.56□□□□□ -0.4
SF3B3-208ENST00000567250 C5orf22Q49AR2 442 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 RNF43Q68DV7 783 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 FSTL4Q6MZW2 842 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 RAD9BQ6WBX8 426 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 TRMT11Q7Z4G4 463 aaKnown RBP12.56□□□□□ -0.4
SF3B3-208ENST00000567250 CARNMT1Q8N4J0 409 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 CCDC185Q8N715 623 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 SLC35G2Q8TBE7 412 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 UCMAQ8WVF2 138 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 ACDQ96AP0 544 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms