RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 HJURPQ8NCD3 748 aaPredicted RBP19.46■□□□□ 0.71
CLN3-218ENST00000565688 CLEC4CQ8WTT0 213 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 MIS12Q9H081 205 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 TLR6Q9Y2C9 796 aa19.46■□□□□ 0.71
CLN3-218ENST00000565688 MED7O43513 233 aa19.45■□□□□ 0.7
CLN3-218ENST00000565688 TOP3BO95985 862 aaKnown RBP19.45■□□□□ 0.7
CLN3-218ENST00000565688 RPL34P49207 117 aaKnown RBP19.45■□□□□ 0.7
CLN3-218ENST00000565688 ZNF423Q2M1K9 1284 aa19.45■□□□□ 0.7
CLN3-218ENST00000565688 IL27RAQ6UWB1 636 aa19.45■□□□□ 0.7
CLN3-218ENST00000565688 BEND5Q7L4P6 421 aa19.45■□□□□ 0.7
CLN3-218ENST00000565688 CCDC117Q8IWD4 279 aaPredicted RBP19.45■□□□□ 0.7
CLN3-218ENST00000565688 SCUBE3Q8IX30 993 aa19.45■□□□□ 0.7
CLN3-218ENST00000565688 FIBINQ8TAL6 211 aa19.45■□□□□ 0.7
CLN3-218ENST00000565688 DQX1Q8TE96 717 aaKnown RBP19.45■□□□□ 0.7
CLN3-218ENST00000565688 STK32AQ8WU08 396 aa19.45■□□□□ 0.7
CLN3-218ENST00000565688 KREMEN1Q96MU8 473 aa19.45■□□□□ 0.7
CLN3-218ENST00000565688 INTS2Q9H0H0 1204 aaKnown RBP19.45■□□□□ 0.7
CLN3-218ENST00000565688 ST7Q9NRC1 585 aa19.45■□□□□ 0.7
CLN3-218ENST00000565688 SUN2Q9UH99 717 aa19.45■□□□□ 0.7
CLN3-218ENST00000565688 GOLGA6L7A0A1B0GV03 622 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 BIN1O00499 593 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 FYNP06241 537 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 KRT5P13647 590 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 SLC6A4P31645 630 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 CD70P32970 193 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 GPD2P43304 727 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 ENOSF1Q7L5Y1 443 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 FAM124AQ86V42 546 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 MFN1Q8IWA4 741 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 GATA6Q92908 595 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 FAM149B1Q96BN6 582 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 SRRTQ9BXP5 876 aaKnown RBP19.44■□□□□ 0.7
CLN3-218ENST00000565688 PRSS16Q9NQE7 514 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 EIF2B4Q9UI10 523 aaKnown RBP19.44■□□□□ 0.7
CLN3-218ENST00000565688 PCDHB9Q9Y5E1 797 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 ASPMQ8IZT6 3477 aa19.44■□□□□ 0.7
CLN3-218ENST00000565688 ZFHX4Q86UP3 3567 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 MUC22E2RYF6 1773 aaPredicted RBP19.43■□□□□ 0.7
CLN3-218ENST00000565688 HYAL3O43820 417 aaPredicted RBP19.43■□□□□ 0.7
CLN3-218ENST00000565688 SH3BP5O60239 455 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 CER1O95813 267 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 CALCAP01258 141 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 DNTTP04053 509 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 ASLP04424 464 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 ZNF883P0CG24 379 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 STX17P56962 302 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 ST8SIA6P61647 398 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 TRIP6Q15654 476 aaKnown RBP19.43■□□□□ 0.7
CLN3-218ENST00000565688 TTC31Q49AM3 519 aaPredicted RBP19.43■□□□□ 0.7
CLN3-218ENST00000565688 NADSYN1Q6IA69 706 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 NAXDQ8IW45 347 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 ZNF366Q8N895 744 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 WFDC5Q8TCV5 224 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 TTC17Q96AE7 1141 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 FCRL2Q96LA5 508 aaPredicted RBP19.43■□□□□ 0.7
CLN3-218ENST00000565688 FAM81BQ96LP2 452 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 TMEM121BQ9BXQ6 578 aaPredicted RBP19.43■□□□□ 0.7
CLN3-218ENST00000565688 UBE2TQ9NPD8 197 aaPredicted RBP19.43■□□□□ 0.7
CLN3-218ENST00000565688 STIM2Q9P246 746 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 NAALADL1Q9UQQ1 740 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 MSRB2Q9Y3D2 182 aa19.43■□□□□ 0.7
CLN3-218ENST00000565688 CAPN9O14815 690 aa19.42■□□□□ 0.7
CLN3-218ENST00000565688 MATKP42679 507 aa19.42■□□□□ 0.7
CLN3-218ENST00000565688 AFF3P51826 1226 aaKnown RBP19.42■□□□□ 0.7
CLN3-218ENST00000565688 RPS14P62263 151 aaKnown RBP19.42■□□□□ 0.7
CLN3-218ENST00000565688 FAM193AP78312 1265 aa19.42■□□□□ 0.7
CLN3-218ENST00000565688 CDH18Q13634 790 aa19.42■□□□□ 0.7
CLN3-218ENST00000565688 ZNF776Q68DI1 518 aaPredicted RBP19.42■□□□□ 0.7
CLN3-218ENST00000565688 KDM1BQ8NB78 822 aa19.42■□□□□ 0.7
CLN3-218ENST00000565688 C1orf216Q8TAB5 229 aa19.42■□□□□ 0.7
CLN3-218ENST00000565688 SNX19Q92543 992 aa19.42■□□□□ 0.7
CLN3-218ENST00000565688 SLC39A13Q96H72 371 aa19.42■□□□□ 0.7
CLN3-218ENST00000565688 LMLNQ96KR4 655 aa19.42■□□□□ 0.7
CLN3-218ENST00000565688 PRICKLE1Q96MT3 831 aaPredicted RBP19.42■□□□□ 0.7
CLN3-218ENST00000565688 MED15Q96RN5 788 aa19.42■□□□□ 0.7
CLN3-218ENST00000565688 SLC4A5Q9BY07 1137 aa19.42■□□□□ 0.7
CLN3-218ENST00000565688 BTBD1Q9H0C5 482 aa19.42■□□□□ 0.7
CLN3-218ENST00000565688 ZMIZ1Q9ULJ6 1067 aa19.42■□□□□ 0.7
CLN3-218ENST00000565688 SCML1Q9UN30 329 aa19.42■□□□□ 0.7
CLN3-218ENST00000565688 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.42■□□□□ 0.7
CLN3-218ENST00000565688 LETM1O95202 739 aaPredicted RBP19.41■□□□□ 0.7
CLN3-218ENST00000565688 SEMA4FO95754 770 aa19.41■□□□□ 0.7
CLN3-218ENST00000565688 APOEP02649 317 aa19.41■□□□□ 0.7
CLN3-218ENST00000565688 ACSL1P33121 698 aa19.41■□□□□ 0.7
CLN3-218ENST00000565688 SFSWAPQ12872 951 aaKnown RBP19.41■□□□□ 0.7
CLN3-218ENST00000565688 MS4A13Q5J8X5 152 aa19.41■□□□□ 0.7
CLN3-218ENST00000565688 DENND1BQ6P3S1 775 aa19.41■□□□□ 0.7
CLN3-218ENST00000565688 CARNMT1Q8N4J0 409 aa19.41■□□□□ 0.7
CLN3-218ENST00000565688 ZNF606Q8WXB4 792 aa19.41■□□□□ 0.7
CLN3-218ENST00000565688 CAMK1GQ96NX5 476 aa19.41■□□□□ 0.7
CLN3-218ENST00000565688 C6orf106Q9H6K1 298 aaPredicted RBP19.41■□□□□ 0.7
CLN3-218ENST00000565688 GAREM1Q9H706 876 aa19.41■□□□□ 0.7
CLN3-218ENST00000565688 POPDC2Q9HBU9 364 aa19.41■□□□□ 0.7
CLN3-218ENST00000565688 SGK2Q9HBY8 427 aa19.41■□□□□ 0.7
CLN3-218ENST00000565688 OSGEPQ9NPF4 335 aa19.41■□□□□ 0.7
CLN3-218ENST00000565688 FAM221BA6H8Z2 402 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 RNASEH1O60930 286 aaKnown RBP19.4■□□□□ 0.7
CLN3-218ENST00000565688 GADD45BO75293 160 aaPredicted RBP19.4■□□□□ 0.7
CLN3-218ENST00000565688 MOCS3O95396 460 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 GNA15P30679 374 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms