RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 RAP1GAP2Q684P5 730 aa18.34■□□□□ 0.53
NME3-205ENST00000563854 ADIPOR2Q86V24 386 aa18.34■□□□□ 0.53
NME3-205ENST00000563854 CHSY1Q86X52 802 aa18.34■□□□□ 0.53
NME3-205ENST00000563854 LGI2Q8N0V4 545 aa18.34■□□□□ 0.53
NME3-205ENST00000563854 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.34■□□□□ 0.53
NME3-205ENST00000563854 C1orf131Q8NDD1 294 aaKnown RBP18.34■□□□□ 0.53
NME3-205ENST00000563854 SIX2Q9NPC8 291 aa18.34■□□□□ 0.53
NME3-205ENST00000563854 ITM2CQ9NQX7 267 aa18.34■□□□□ 0.53
NME3-205ENST00000563854 MUC22E2RYF6 1773 aaPredicted RBP18.33■□□□□ 0.53
NME3-205ENST00000563854 FAM170AA1A519 330 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 GRAP2O75791 330 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 TRUB2O95900 331 aaKnown RBP18.33■□□□□ 0.52
NME3-205ENST00000563854 ATP5BP06576 529 aaKnown RBP18.33■□□□□ 0.52
NME3-205ENST00000563854 SERPINF2P08697 491 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 DLDP09622 509 aaKnown RBP18.33■□□□□ 0.52
NME3-205ENST00000563854 PITX1P78337 314 aaPredicted RBP18.33■□□□□ 0.52
NME3-205ENST00000563854 RAPGEF1Q13905 1077 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 VWA3BQ502W6 1294 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 DCAF6Q58WW2 860 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 MPP7Q5T2T1 576 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 RABEPKQ7Z6M1 372 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 TMEM110Q86TL2 294 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 OR2I1PQ8NGU4 316 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 OR2T3Q8NH03 318 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 FOXJ1Q92949 421 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 AZIN2Q96A70 460 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 SLC39A13Q96H72 371 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 PPP1R13BQ96KQ4 1090 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 CPXM1Q96SM3 734 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 TUBGCP2Q9BSJ2 902 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 MIR1-1HGQ9H1L0 117 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 LHX5Q9H2C1 402 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 NDST4Q9H3R1 872 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 SYNCQ9H7C4 482 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 PLCB1Q9NQ66 1216 aa18.33■□□□□ 0.52
NME3-205ENST00000563854 WSB2Q9NYS7 404 aaPredicted RBP18.33■□□□□ 0.52
NME3-205ENST00000563854 KRT9P35527 623 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 NUMBP49757 651 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 ST8SIA6P61647 398 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 ZNF252P-AS1Q0IIN9 211 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 PTPRNQ16849 979 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 PLEKHG6Q3KR16 790 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 MS4A13Q5J8X5 152 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 WDR45BQ5MNZ6 344 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 OR6B2Q6IFH4 312 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 MMS22LQ6ZRQ5 1243 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 METTL3Q86U44 580 aaKnown RBP18.32■□□□□ 0.52
NME3-205ENST00000563854 SLC47A2Q86VL8 602 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 HDDC3Q8N4P3 179 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 WDTC1Q8N5D0 677 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 ZNF557Q8N988 423 aaPredicted RBP18.32■□□□□ 0.52
NME3-205ENST00000563854 DEFB124Q8NES8 71 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 SNX19Q92543 992 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 RNF34Q969K3 372 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 ZNF419Q96HQ0 510 aaPredicted RBP18.32■□□□□ 0.52
NME3-205ENST00000563854 NOX5Q96PH1 765 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 PDCL3Q9H2J4 239 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 TMEM245Q9H330 911 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 DDIT4Q9NX09 232 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 CEP83Q9Y592 693 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 TPRP12270 2363 aaKnown RBP18.32■□□□□ 0.52
NME3-205ENST00000563854 CKAP5Q14008 2032 aa18.32■□□□□ 0.52
NME3-205ENST00000563854 ADAMTS9Q9P2N4 1935 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 H0Y626 953 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 FOXN3O00409 490 aaPredicted RBP18.31■□□□□ 0.52
NME3-205ENST00000563854 GNSP15586 552 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 TACR2P21452 398 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 ERCC5P28715 1186 aaPredicted RBP18.31■□□□□ 0.52
NME3-205ENST00000563854 OXTRP30559 389 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 CSKP41240 450 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 CDK17Q00537 523 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 CAMK2GQ13555 558 aaPredicted RBP18.31■□□□□ 0.52
NME3-205ENST00000563854 KCNJ12Q14500 433 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 MIIPQ5JXC2 388 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 FAM183BPQ6ZVS7 135 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 BEND5Q7L4P6 421 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 KIAA0907Q7Z7F0 614 aaPredicted RBP18.31■□□□□ 0.52
NME3-205ENST00000563854 DEFB106AQ8N104 65 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 ZCCHC9Q8N567 271 aaKnown RBP18.31■□□□□ 0.52
NME3-205ENST00000563854 MINDY1Q8N5J2 469 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 ATP6V0D2Q8N8Y2 350 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 FIBINQ8TAL6 211 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 IRX2Q9BZI1 471 aaPredicted RBP18.31■□□□□ 0.52
NME3-205ENST00000563854 MTG2Q9H4K7 406 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 CAPN10Q9HC96 672 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 SUSD2Q9UGT4 822 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 ANGPTL2Q9UKU9 493 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 PCDHGC3Q9UN70 934 aa18.31■□□□□ 0.52
NME3-205ENST00000563854 F5H5T6 163 aa18.3■□□□□ 0.52
NME3-205ENST00000563854 LUC7L3O95232 432 aaKnown RBP18.3■□□□□ 0.52
NME3-205ENST00000563854 ERBB2P04626 1255 aa18.3■□□□□ 0.52
NME3-205ENST00000563854 SYPP08247 313 aa18.3■□□□□ 0.52
NME3-205ENST00000563854 FSCBQ5H9T9 825 aa18.3■□□□□ 0.52
NME3-205ENST00000563854 PITRM1Q5JRX3 1037 aa18.3■□□□□ 0.52
NME3-205ENST00000563854 EFHC1Q5JVL4 640 aa18.3■□□□□ 0.52
NME3-205ENST00000563854 DCAF12L1Q5VU92 463 aa18.3■□□□□ 0.52
NME3-205ENST00000563854 C11orf57Q6ZUT1 292 aaPredicted RBP18.3■□□□□ 0.52
NME3-205ENST00000563854 CIR1Q86X95 450 aaPredicted RBP18.3■□□□□ 0.52
NME3-205ENST00000563854 BTN2A3PQ96KV6 586 aa18.3■□□□□ 0.52
NME3-205ENST00000563854 NUP58Q9BVL2 599 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms