RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 GPATCH4Q5T3I0 446 aaKnown RBP6.4□□□□□ -1.39
CLK3-212ENST00000563418 WDR59Q6PJI9 974 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 DNAAF5Q86Y56 855 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 APOL2Q9BQE5 337 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 HDHD2Q9H0R4 259 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 KBTBD4Q9NVX7 518 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 GPRC5DQ9NZD1 345 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 MRC2Q9UBG0 1479 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 DBTP11182 482 aaKnown RBP6.4□□□□□ -1.39
CLK3-212ENST00000563418 SLC25A3Q00325 362 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 NSUN2Q08J23 767 aaKnown RBP eCLIP6.4□□□□□ -1.39
CLK3-212ENST00000563418 NFX1Q12986 1120 aaKnown RBP6.4□□□□□ -1.39
CLK3-212ENST00000563418 SLC12A1Q13621 1099 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 AARS2Q5JTZ9 985 aaKnown RBP6.4□□□□□ -1.39
CLK3-212ENST00000563418 SNRNP48Q6IEG0 339 aaKnown RBP6.4□□□□□ -1.39
CLK3-212ENST00000563418 EYA1Q99502 592 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 PRRG3Q9BZD7 231 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 TGM6O95932 706 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 TOP3BO95985 862 aaKnown RBP6.4□□□□□ -1.39
CLK3-212ENST00000563418 TFE3P19532 575 aaPredicted RBP6.4□□□□□ -1.39
CLK3-212ENST00000563418 DCDC5Q6ZRR9 648 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 PAGE2Q7Z2X7 111 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 ITIH5Q86UX2 942 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 THNSL1Q8IYQ7 743 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 ACTRT2Q8TDY3 377 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 FAR1Q8WVX9 515 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 PPA2Q9H2U2 334 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 TASP1Q9H6P5 420 aa6.4□□□□□ -1.39
CLK3-212ENST00000563418 TK2O00142 265 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 FOXO3O43524 673 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 ENTPD1P49961 510 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 ZNF45Q02386 682 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 TFDP3Q5H9I0 405 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 TMEM214Q6NUQ4 689 aaKnown RBP6.39□□□□□ -1.39
CLK3-212ENST00000563418 USP43Q70EL4 1123 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 TADA1Q96BN2 335 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 ZC3H10Q96K80 434 aaKnown RBP6.39□□□□□ -1.39
CLK3-212ENST00000563418 PREX2Q70Z35 1606 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 MYO3AQ8NEV4 1616 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 XDHP47989 1333 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 MARSP56192 900 aaKnown RBP6.39□□□□□ -1.39
CLK3-212ENST00000563418 BCAR1P56945 870 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 TSEN34Q9BSV6 310 aaKnown RBP6.39□□□□□ -1.39
CLK3-212ENST00000563418 TEKT3Q9BXF9 490 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 SEMA6AQ9H2E6 1030 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 XKR8Q9H6D3 395 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 GPBP1L1Q9HC44 474 aaPredicted RBP6.39□□□□□ -1.39
CLK3-212ENST00000563418 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.39□□□□□ -1.39
CLK3-212ENST00000563418 PMF1-BGLAPU3KQ54 211 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 MYO1GB0I1T2 1018 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 H3BSA7 217 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 SSNA1O43805 119 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 RALAP11233 206 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 PKLRP30613 574 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 CAPGP40121 348 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 NME3Q13232 169 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 SWI5Q1ZZU3 235 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 TIGD2Q4W5G0 525 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 COBLL1Q53SF7 1204 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 ZNF57Q68EA5 555 aaPredicted RBP6.39□□□□□ -1.39
CLK3-212ENST00000563418 ZNF517Q6ZMY9 492 aaPredicted RBP6.39□□□□□ -1.39
CLK3-212ENST00000563418 THAP5Q7Z6K1 395 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 TBC1D21Q8IYX1 336 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 ANKRD53Q8N9V6 530 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 TRPV1Q8NER1 839 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 C10orf82Q8WW14 230 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 GATA6Q92908 595 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 CASZ1Q86V15 1759 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 HNRNPDLO14979 420 aaKnown RBP6.39□□□□□ -1.39
CLK3-212ENST00000563418 DFNA5O60443 496 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 ATP6V1B2P21281 511 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 PRKCIP41743 596 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 S100A12P80511 92 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 KLRC3Q07444 240 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 RBM48Q5RL73 367 aaKnown RBP6.39□□□□□ -1.39
CLK3-212ENST00000563418 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.39□□□□□ -1.39
CLK3-212ENST00000563418 PLEKHG7Q6ZR37 379 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 TICAM1Q8IUC6 712 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 PGAM4Q8N0Y7 254 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 MKRN2Q9H000 416 aaKnown RBP6.39□□□□□ -1.39
CLK3-212ENST00000563418 GJB4Q9NTQ9 266 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 MAD2L2Q9UI95 211 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 RAD54BQ9Y620 910 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 MYH15Q9Y2K3 1946 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 FAM237BA0A1B0GVD1 139 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 BBIP1A8MTZ0 92 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 E5RI56 91 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 E7ENX8 843 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 PSMD3O43242 534 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 SSX5O60225 188 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 CDK4P11802 303 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 NPR2P20594 1047 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 AP3B2Q13367 1082 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 CIAPIN1Q6FI81 312 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 OXER1Q8TDS5 423 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 SIPA1Q96FS4 1042 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 DCAF5Q96JK2 942 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 VAV3Q9UKW4 847 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 PCDHA3Q9Y5H8 950 aa6.39□□□□□ -1.39
CLK3-212ENST00000563418 FAM25EA8MYX2 175 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms