RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CFAP99D6REC4 459 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 SOD2P04179 222 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 ITGB6P18564 788 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 BMPR1AP36894 532 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 SEC13P55735 322 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 VSNL1P62760 191 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 SMARCB1Q12824 385 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 SYTL3Q4VX76 610 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 SH3PXD2AQ5TCZ1 1133 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 SYPL2Q5VXT5 272 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 DOK6Q6PKX4 331 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 CLEC20AQ6ZU45 233 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 KLHDC9Q8NEP7 349 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 LRRC8CQ8TDW0 803 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 SH3RF2Q8TEC5 729 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 WHAMMQ8TF30 809 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 SGF29Q96ES7 293 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 ZYG11BQ9C0D3 744 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 DUS2Q9NX74 493 aaKnown RBP9.49□□□□□ -0.89
VPS39-205ENST00000562258 CXXC1Q9P0U4 656 aaPredicted RBP9.49□□□□□ -0.89
VPS39-205ENST00000562258 FBXO10Q9UK96 956 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 IQANK1A0A1B0GTG1 560 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 RNF103O00237 685 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 COPEO14579 308 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 FOSL2P15408 326 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 TGM2P21980 687 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 KDELR1P24390 212 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 RPS24P62847 133 aaKnown RBP9.49□□□□□ -0.89
VPS39-205ENST00000562258 NTHL1P78549 312 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 BCL2L1Q07817 233 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 CASP8Q14790 479 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 TIGD7Q6NT04 549 aaPredicted RBP9.49□□□□□ -0.89
VPS39-205ENST00000562258 TRIM67Q6ZTA4 783 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 PTAR1Q7Z6K3 402 aaPredicted RBP9.49□□□□□ -0.89
VPS39-205ENST00000562258 PYROXD2Q8N2H3 581 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 ULK4Q96C45 1275 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 TRAIPQ9BWF2 469 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 ARHGEF4Q9NR80 690 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 C2orf81A6NN90 581 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 CCT5P48643 541 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 CLCN6P51797 869 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 CENPCQ03188 943 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 USP10Q14694 798 aaKnown RBP9.49□□□□□ -0.89
VPS39-205ENST00000562258 MEA1Q16626 185 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 CLLU1OSQ5K130 101 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 TMTC4Q5T4D3 741 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 LHX8Q68G74 356 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 B3GNT9Q6UX72 402 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 TAC4Q86UU9 113 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 SCG3Q8WXD2 468 aaKnown RBP9.49□□□□□ -0.89
VPS39-205ENST00000562258 SPATA17Q96L03 361 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 TOX2Q96NM4 488 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 TSPAN18Q96SJ8 248 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 TLR10Q9BXR5 811 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 SLC7A5P2Q9GIP4 190 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 SDCBP2Q9H190 292 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 CHST7Q9NS84 486 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 ARHGEF38Q9NXL2 777 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 EPHX1P07099 455 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 COL6A1P12109 1028 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 ZNF284Q2VY69 593 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 HFE2Q6ZVN8 426 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 MICALCLQ6ZW33 695 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 PHF13Q86YI8 300 aaPredicted RBP9.48□□□□□ -0.89
VPS39-205ENST00000562258 HTR3CQ8WXA8 447 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 ERP44Q9BS26 406 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 UNKQ9C0B0 810 aaKnown RBP9.48□□□□□ -0.89
VPS39-205ENST00000562258 PDLIM7Q9NR12 457 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 WNT6Q9Y6F9 365 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 MTMR11A4FU01 709 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 ZSCAN5CA6NGD5 496 aaPredicted RBP9.48□□□□□ -0.89
VPS39-205ENST00000562258 PDZK1P1A8MUH7 402 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 TRIM16O95361 564 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 CNPP09543 421 aaKnown RBP9.48□□□□□ -0.89
VPS39-205ENST00000562258 WARSP23381 471 aaKnown RBP9.48□□□□□ -0.89
VPS39-205ENST00000562258 KCNQ1P51787 676 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 GEMP55040 296 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 DAOAP59103 153 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 FOXD4Q12950 439 aaPredicted RBP9.48□□□□□ -0.89
VPS39-205ENST00000562258 GPR17Q13304 367 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 SHHQ15465 462 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 UPP1Q16831 310 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 SLC25A52Q3SY17 297 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 OR7D4Q8NG98 312 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 OR2W6PQ8NHA6 318 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 SEMA3CQ99985 751 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 HAPLN2Q9GZV7 340 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 DMGDHQ9UI17 866 aaKnown RBP9.48□□□□□ -0.89
VPS39-205ENST00000562258 COQ4Q9Y3A0 265 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 ADAMTS7Q9UKP4 1686 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 INPPL1O15357 1258 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 SPAG7O75391 227 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 STBD1O95210 358 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 EDN1P05305 212 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 POLBP06746 335 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 RALBP11234 206 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 GFAPP14136 432 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 FSHRP23945 695 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 CASP2P42575 452 aa9.48□□□□□ -0.89
VPS39-205ENST00000562258 MMP13P45452 471 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms