RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 DMRTA1Q5VZB9 504 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 NADSYN1Q6IA69 706 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 KIAA0907Q7Z7F0 614 aaPredicted RBP12.11□□□□□ -0.47
USP3-220ENST00000561381 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.11□□□□□ -0.47
USP3-220ENST00000561381 DHTKD1Q96HY7 919 aaPredicted RBP12.11□□□□□ -0.47
USP3-220ENST00000561381 CEP63Q96MT8 703 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 TIGD1Q96MW7 591 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 NUP58Q9BVL2 599 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 MIS12Q9H081 205 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 MTG2Q9H4K7 406 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 EIF2B4Q9UI10 523 aaKnown RBP12.11□□□□□ -0.47
USP3-220ENST00000561381 SPEGQ15772 3267 aa12.11□□□□□ -0.47
USP3-220ENST00000561381 PPP1R3GB7ZBB8 358 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 PMM2O15305 246 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 BCAT2O15382 392 aaPredicted RBP12.1□□□□□ -0.47
USP3-220ENST00000561381 LTFP02788 710 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 FYNP06241 537 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 ACSL1P33121 698 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 ZNF445P59923 1031 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 SLC14A1Q13336 389 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 STIM1Q13586 685 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 MBLAC2Q68D91 279 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 NAXDQ8IW45 347 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 AHI1Q8N157 1196 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 PNPLA1Q8N8W4 532 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 C1orf216Q8TAB5 229 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 WFIKKN2Q8TEU8 576 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 NELFBQ8WX92 580 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 IRGQQ8WZA9 623 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 SNX19Q92543 992 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 LMLNQ96KR4 655 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 PRICKLE1Q96MT3 831 aaPredicted RBP12.1□□□□□ -0.47
USP3-220ENST00000561381 KREMEN1Q96MU8 473 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 LHX5Q9H2C1 402 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 C6orf106Q9H6K1 298 aaPredicted RBP12.1□□□□□ -0.47
USP3-220ENST00000561381 PRSS16Q9NQE7 514 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 STIM2Q9P246 746 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 PLA2G4CQ9UP65 541 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 CTNND2Q9UQB3 1225 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 FNDC3AQ9Y2H6 1198 aaKnown RBP12.1□□□□□ -0.47
USP3-220ENST00000561381 MSRB2Q9Y3D2 182 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 NFE2L3Q9Y4A8 694 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 NEUROG3Q9Y4Z2 214 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 GTF3C3Q9Y5Q9 886 aa12.1□□□□□ -0.47
USP3-220ENST00000561381 A0A1B0GVT2 93 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 BIN1O00499 593 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 ACSL4O60488 711 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 DLDP09622 509 aaKnown RBP12.09□□□□□ -0.47
USP3-220ENST00000561381 SLC11A2P49281 568 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 CSNK1EP49674 416 aaKnown RBP12.09□□□□□ -0.47
USP3-220ENST00000561381 STX17P56962 302 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 TBX4P57082 545 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 RPS14P62263 151 aaKnown RBP12.09□□□□□ -0.47
USP3-220ENST00000561381 RPS24P62847 133 aaKnown RBP12.09□□□□□ -0.47
USP3-220ENST00000561381 E2F5Q15329 346 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 TRIP6Q15654 476 aaKnown RBP12.09□□□□□ -0.47
USP3-220ENST00000561381 LAYNQ6UX15 382 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 RAB44Q7Z6P3 723 aaPredicted RBP12.09□□□□□ -0.47
USP3-220ENST00000561381 SCUBE3Q8IX30 993 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 ADAM32Q8TC27 787 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 DQX1Q8TE96 717 aaKnown RBP12.09□□□□□ -0.47
USP3-220ENST00000561381 ZCCHC14Q8WYQ9 949 aaKnown RBP12.09□□□□□ -0.47
USP3-220ENST00000561381 FCRL2Q96LA5 508 aaPredicted RBP12.09□□□□□ -0.47
USP3-220ENST00000561381 HSFY1Q96LI6 401 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 GTPBP4Q9BZE4 634 aaKnown RBP12.09□□□□□ -0.47
USP3-220ENST00000561381 ZDHHC5Q9C0B5 715 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 NUCKS1Q9H1E3 243 aaKnown RBP12.09□□□□□ -0.47
USP3-220ENST00000561381 GAREM1Q9H706 876 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 XPO7Q9UIA9 1087 aaKnown RBP12.09□□□□□ -0.47
USP3-220ENST00000561381 HOOK1Q9UJC3 728 aaKnown RBP12.09□□□□□ -0.47
USP3-220ENST00000561381 INTS6Q9UL03 887 aaKnown RBP12.09□□□□□ -0.47
USP3-220ENST00000561381 NAALADL1Q9UQQ1 740 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 AKAP13Q12802 2813 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 ASPMQ8IZT6 3477 aa12.09□□□□□ -0.47
USP3-220ENST00000561381 SRRM3A6NNA2 597 aaPredicted RBP12.08□□□□□ -0.48
USP3-220ENST00000561381 P4HA2O15460 535 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 CBFA2T3O75081 653 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 FBXO21O94952 628 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 POLR2EP19388 210 aaKnown RBP12.08□□□□□ -0.48
USP3-220ENST00000561381 GPD2P43304 727 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 NUCB2P80303 420 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 RING1Q06587 406 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 KCNH2Q12809 1159 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 MORC3Q14149 939 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 STILQ15468 1287 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 ZNF423Q2M1K9 1284 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 HLA-BQ31612 363 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 MPP7Q5T2T1 576 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 SYPL2Q5VXT5 272 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 NUGGCQ68CJ6 796 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 DENND1BQ6P3S1 775 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 MMS22LQ6ZRQ5 1243 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 MFN1Q8IWA4 741 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 TRIM59Q8IWR1 403 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 UNC45BQ8IWX7 931 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 CFAP52Q8N1V2 620 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 ZNF454Q8N9F8 522 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 EHBP1Q8NDI1 1231 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 MYO19Q96H55 970 aa12.08□□□□□ -0.48
USP3-220ENST00000561381 KCNK17Q96T54 332 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms