RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 MPP4Q96JB8 637 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZCCHC2Q9C0B9 1178 aaKnown RBP13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 ASB7Q9H672 318 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 NINJ2Q9NZG7 142 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 LIMD1Q9UGP4 676 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 TULP4Q9NRJ4 1543 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 CCDC154A6NI56 674 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 TTLL13PA6NNM8 815 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 SYNCRIPO60506 623 aaKnown RBP13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 RAG1P15918 1043 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 FLT3P36888 993 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 THPOP40225 353 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 ORC1Q13415 861 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 CARNMT1Q8N4J0 409 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 SPIRE2Q8WWL2 714 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 PPP1R14AQ96A00 147 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZNF184Q99676 751 aaPredicted RBP13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 EHD4Q9H223 541 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 FBXO28Q9NVF7 368 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 ADCY10Q96PN6 1610 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 ERVK-9P63128 1117 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 SLC45A4Q5BKX6 768 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 SCARA3Q6AZY7 606 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 ARHGEF19Q8IW93 802 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 MCOLN3Q8TDD5 553 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 PHF21BQ96EK2 531 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 RNF145Q96MT1 663 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 TLR10Q9BXR5 811 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 FBXO44Q9H4M3 255 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 DYTNA2CJ06 578 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 TSC22D2O75157 780 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 RECQL5O94762 991 aaPredicted RBP13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 RPL21P46778 160 aaKnown RBP13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 SCNN1BP51168 640 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 TRAF3Q13114 568 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 RRP1BQ14684 758 aaKnown RBP13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZNF618Q5T7W0 954 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 REPS1Q96D71 796 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 OMA1Q96E52 524 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 IPPQ9Y573 584 aa13.49□□□□□ -0.25
CSPG4P11-201ENST00000560634 CCNT2O60583 730 aaKnown RBP13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 RAMP2O60895 175 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 YWHAZP63104 245 aaKnown RBP13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 GRIK3Q13003 919 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 POU6F1Q14863 301 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 KRT74Q7RTS7 529 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 PALB2Q86YC2 1186 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 TMEM132CQ8N3T6 1108 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 GMCL1P1Q8NEA9 526 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 MOSPD2Q8NHP6 518 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 AENQ8WTP8 325 aaKnown RBP13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 IL25Q9H293 177 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 RIOX1Q9H6W3 641 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 MID1IP1Q9NPA3 183 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 FSBPO95073 299 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 PAEPP09466 180 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 MYL4P12829 197 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 YY1P25490 414 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 TOP3AQ13472 1001 aaPredicted RBP13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 CBWD3Q5JTY5 395 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 CBWD5Q5RIA9 395 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 TXNRD3Q86VQ6 643 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 NT5DC4Q86YG4 428 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 CAMK1DQ8IU85 385 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 TMEM159Q96B96 161 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 CDRT15Q96T59 188 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 C6orf62Q9GZU0 229 aaPredicted RBP13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 SLITRK2Q9H156 845 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 MAPRE3Q9UPY8 281 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 CDC42BPAQ5VT25 1732 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 IL6P05231 212 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 RARAP10276 462 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 TGFB3P10600 412 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 PTPN3P26045 913 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 GRK4P32298 578 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 GMPSP49915 693 aaPredicted RBP13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 DCTN2Q13561 401 aaKnown RBP13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 SEC23AQ15436 765 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 C16orf62Q7Z3J2 963 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 POP1Q99575 1024 aaKnown RBP13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 GDF3Q9NR23 364 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 STON1Q9Y6Q2 735 aa13.48□□□□□ -0.25
CSPG4P11-201ENST00000560634 NOS3P29474 1203 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 GCLCP48506 637 aaPredicted RBP13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 ATP1A4Q13733 1029 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 NAIF1Q69YI7 327 aaPredicted RBP13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 ARHGAP22Q7Z5H3 698 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 SNX32Q86XE0 403 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 BHMTQ93088 406 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 FAM136AQ96C01 138 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 PANX3Q96QZ0 392 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 REXO4Q9GZR2 422 aaKnown RBP13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 TLR8Q9NR97 1041 aaKnown RBP13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 RAD18Q9NS91 495 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 TMX2Q9Y320 296 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 BCLAF3A2AJT9 711 aaKnown RBP13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 PRR23AA6NEV1 266 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 CBX4O00257 560 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 MYL12BO14950 172 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 HS6ST1O60243 411 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms