RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 FAM50BQ9Y247 325 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 TCF3P15923 654 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 MMP13P45452 471 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 RHBDL3P58872 404 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 USP41Q3LFD5 358 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 ACOX2Q99424 681 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 OSBPL1AQ9BXW6 950 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 KLC4Q9NSK0 619 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 SNX8Q9Y5X2 465 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 LLGL2Q6P1M3 1020 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 SLC26A11Q86WA9 606 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 OSBPL10Q9BXB5 764 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 POLR1EQ9GZS1 481 aaKnown RBP13.77□□□□□ -0.21
TRAF3-208ENST00000560371 USE1Q9NZ43 259 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 NDOR1Q9UHB4 597 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 MYH15Q9Y2K3 1946 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 CHKAP35790 457 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 RUNX1T1Q06455 604 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 MAGEC3Q8TD91 643 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 CASKIN2Q8WXE0 1202 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 MPP6Q9NZW5 540 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 ARHGAP20Q9P2F6 1191 aa13.77□□□□□ -0.21
TRAF3-208ENST00000560371 KRT6AP02538 564 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 KRT6BP04259 564 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 RRM2P31350 389 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 KRT6CP48668 564 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 GRIK5Q16478 980 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 ST3GAL5Q9UNP4 418 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 DLG5Q8TDM6 1919 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 RNF103O00237 685 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 TRIP10Q15642 601 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 MRPL42Q9Y6G3 142 aaKnown RBP13.76□□□□□ -0.21
TRAF3-208ENST00000560371 SLCO1B7G3V0H7 640 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 ARHGEF9O43307 516 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 TPH1P17752 444 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 RPL9P32969 192 aaKnown RBP13.76□□□□□ -0.21
TRAF3-208ENST00000560371 PSEN1P49768 467 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 NDUFV1P49821 464 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 SNRPD1P62314 119 aaKnown RBP13.76□□□□□ -0.21
TRAF3-208ENST00000560371 PLPPR4Q7Z2D5 763 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 MDM1Q8TC05 714 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 PNMA5Q96PV4 448 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 EVA1BQ9NVM1 165 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 MYH9P35579 1960 aaKnown RBP13.76□□□□□ -0.21
TRAF3-208ENST00000560371 ATP6AP1LQ52LC2 224 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 CERS5Q8N5B7 392 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 FBXO25Q8TCJ0 367 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 TMEM245Q9H330 911 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 RPS6KB2Q9UBS0 482 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 CCNT2O60583 730 aaKnown RBP13.76□□□□□ -0.21
TRAF3-208ENST00000560371 CPA2P48052 419 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 NME5P56597 212 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 PLOD1Q02809 727 aaPredicted RBP13.76□□□□□ -0.21
TRAF3-208ENST00000560371 DOK6Q6PKX4 331 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 NECAB2Q7Z6G3 386 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 KCNMB4Q86W47 210 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 NKX2-3Q8TAU0 364 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 EPS8L3Q8TE67 593 aaKnown RBP13.76□□□□□ -0.21
TRAF3-208ENST00000560371 PAFAH2Q99487 392 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 MYH3P11055 1940 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 IGF2BP3O00425 579 aaKnown RBP eCLIP13.76□□□□□ -0.21
TRAF3-208ENST00000560371 TFE3P19532 575 aaPredicted RBP13.76□□□□□ -0.21
TRAF3-208ENST00000560371 MIPP30301 263 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 S100A5P33763 92 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 CLK1P49759 484 aaKnown RBP13.76□□□□□ -0.21
TRAF3-208ENST00000560371 PURBQ96QR8 312 aaKnown RBP13.76□□□□□ -0.21
TRAF3-208ENST00000560371 CDC42EP4Q9H3Q1 356 aaKnown RBP13.76□□□□□ -0.21
TRAF3-208ENST00000560371 RGS18Q9NS28 235 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 FAM153AQ9UHL3 310 aa13.76□□□□□ -0.21
TRAF3-208ENST00000560371 TPST1O60507 370 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 CD52P31358 61 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 CRYBB1P53674 252 aaPredicted RBP13.75□□□□□ -0.21
TRAF3-208ENST00000560371 KCNT2Q6UVM3 1135 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 ARHGEF19Q8IW93 802 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 GANQ9H2C0 597 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 EXOSC4Q9NPD3 245 aaKnown RBP13.75□□□□□ -0.21
TRAF3-208ENST00000560371 CDH9Q9ULB4 789 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 PCDHAC2Q9Y5I4 1007 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 CPSF4O95639 269 aaKnown RBP13.75□□□□□ -0.21
TRAF3-208ENST00000560371 CSH1P0DML2 217 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 CSH2P0DML3 217 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 OVGP1Q12889 678 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 IYDQ6PHW0 289 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 C1orf186Q6ZWK4 172 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 MIER2Q8N344 545 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 SMAD5Q99717 465 aaKnown RBP13.75□□□□□ -0.21
TRAF3-208ENST00000560371 ARMC7Q9H6L4 198 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 TNFSF13BQ9Y275 285 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 RGPD8O14715 1765 aaPredicted RBP13.75□□□□□ -0.21
TRAF3-208ENST00000560371 CCDC159P0C7I6 412 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 CPA3P15088 417 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 CDKAL1Q5VV42 579 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 HIPK3Q9H422 1215 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 OR12D3Q9UGF7 316 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 CYP7B1O75881 506 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 WDR47O94967 919 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 THRAP10827 490 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 CYLC2Q14093 348 aaPredicted RBP13.75□□□□□ -0.21
TRAF3-208ENST00000560371 TRIM60Q495X7 471 aa13.75□□□□□ -0.21
TRAF3-208ENST00000560371 ZSWIM2Q8NEG5 633 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms