RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 FYB2Q5VWT5 728 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 GRAMD4Q6IC98 578 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 CHST9Q7L1S5 443 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 TMEM25Q86YD3 366 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 MFN1Q8IWA4 741 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 SYCE1Q8N0S2 351 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 CCDC185Q8N715 623 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 TEKT4Q8WW24 435 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 FAM3CQ92520 227 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 CD101Q93033 1021 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 BTBD6Q96KE9 485 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 PPP1R9BQ96SB3 815 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 PRMT1Q99873 361 aaKnown RBP10.41□□□□□ -0.74
USP3-216ENST00000559873 P2RY13Q9BPV8 354 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 COL25A1Q9BXS0 654 aaPredicted RBP10.41□□□□□ -0.74
USP3-216ENST00000559873 ZYG11BQ9C0D3 744 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 OSBPL2Q9H1P3 480 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 RETREG1Q9H6L5 497 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 ZWILCHQ9H900 591 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 DNAJC17Q9NVM6 304 aaKnown RBP10.41□□□□□ -0.74
USP3-216ENST00000559873 DONSONQ9NYP3 566 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 OR12D3Q9UGF7 316 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 XPO7Q9UIA9 1087 aaKnown RBP10.41□□□□□ -0.74
USP3-216ENST00000559873 VANGL2Q9ULK5 521 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 AP4E1Q9UPM8 1137 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 REXO2Q9Y3B8 237 aaKnown RBP10.41□□□□□ -0.74
USP3-216ENST00000559873 ADGRG1Q9Y653 693 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 COL4A2P08572 1712 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 GOLGA6L7A0A1B0GV03 622 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 KANSL1LA0AUZ9 987 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 E9PAM4 449 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 PI4K2BG5E9Z4 385 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 H0Y626 953 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 GFRA2O00451 464 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 STK25O00506 426 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 FGF10O15520 208 aaPredicted RBP10.4□□□□□ -0.74
USP3-216ENST00000559873 TBL1XO60907 577 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 CLDN11O75508 207 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 LUC7L3O95232 432 aaKnown RBP10.4□□□□□ -0.74
USP3-216ENST00000559873 APODP05090 189 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 HOXD9P28356 352 aaPredicted RBP10.4□□□□□ -0.74
USP3-216ENST00000559873 L1CAMP32004 1257 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 ARL4AP40617 200 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 SOX9P48436 509 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 DGKGP49619 791 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 CDH4P55283 916 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 STARD6P59095 220 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 TPI1P60174 286 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 ZFYVE27Q5T4F4 411 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 ERMARDQ5T6L9 678 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 FBXL22Q6P050 247 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 RFWD3Q6PCD5 774 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 POLNQ7Z5Q5 900 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 ANKS1BQ7Z6G8 1248 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 DAAM2Q86T65 1068 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 RNF10Q8N5U6 811 aaKnown RBP10.4□□□□□ -0.74
USP3-216ENST00000559873 WFIKKN2Q8TEU8 576 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 BHMTQ93088 406 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 TBC1D31Q96DN5 1066 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 PRICKLE1Q96MT3 831 aaPredicted RBP10.4□□□□□ -0.74
USP3-216ENST00000559873 ALS2CR12Q96Q35 445 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 PNKPQ96T60 521 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 SNRNP25Q9BV90 132 aaKnown RBP10.4□□□□□ -0.74
USP3-216ENST00000559873 OSBPL6Q9BZF3 934 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 DHX35Q9H5Z1 703 aaKnown RBP10.4□□□□□ -0.74
USP3-216ENST00000559873 CATSPERBQ9H7T0 1116 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 TBC1D17Q9HA65 648 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 ARHGEF4Q9NR80 690 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 PLK2Q9NYY3 685 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 STIM2Q9P246 746 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 PPARGC1AQ9UBK2 798 aaKnown RBP10.4□□□□□ -0.74
USP3-216ENST00000559873 PCSK1NQ9UHG2 260 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 FZD10Q9ULW2 581 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.4□□□□□ -0.74
USP3-216ENST00000559873 COL4A3Q01955 1670 aa10.4□□□□□ -0.74
USP3-216ENST00000559873 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.39□□□□□ -0.75
USP3-216ENST00000559873 MACROD2A1Z1Q3 448 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 GOLGA6L9A6NEM1 432 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 TMEM221A6NGB7 291 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 OTOL1A6NHN0 477 aaPredicted RBP10.39□□□□□ -0.75
USP3-216ENST00000559873 H3BRJ5 948 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 M0R296 226 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 EEF2KO00418 725 aaKnown RBP10.39□□□□□ -0.75
USP3-216ENST00000559873 TRDMT1O14717 391 aaKnown RBP10.39□□□□□ -0.75
USP3-216ENST00000559873 PSTPIP1O43586 416 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 CREB3O43889 395 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 SRGAP2O75044 1071 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 TULP3O75386 442 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 MOCS3O95396 460 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 GJC1P36383 396 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 GGCXP38435 758 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 GRIA2P42262 883 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 MAGEA9P43362 315 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 MAPKAPK2P49137 400 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 RPS24P62847 133 aaKnown RBP10.39□□□□□ -0.75
USP3-216ENST00000559873 SLC25A11Q02978 314 aaKnown RBP10.39□□□□□ -0.75
USP3-216ENST00000559873 KDSRQ06136 332 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 ZNF177Q13360 481 aaPredicted RBP10.39□□□□□ -0.75
USP3-216ENST00000559873 KRT81Q14533 505 aa10.39□□□□□ -0.75
USP3-216ENST00000559873 UBXN2BQ14CS0 331 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms