RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 ANO4Q32M45 955 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 MS4A13Q5J8X5 152 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 PIK3R6Q5UE93 754 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 RAP1GAP2Q684P5 730 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 RNF135Q8IUD6 432 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 REXO1L1PQ8IX06 675 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 LGI2Q8N0V4 545 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 CCAR2Q8N163 923 aaKnown RBP9.54□□□□□ -0.88
LDLR-210ENST00000559340 KCTD6Q8NC69 237 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 RSAD2Q8WXG1 361 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 SHDQ96IW2 340 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 RPRD1AQ96P16 312 aaPredicted RBP9.54□□□□□ -0.88
LDLR-210ENST00000559340 LRRC3BQ96PB8 259 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 RPP25Q9BUL9 199 aaKnown RBP9.54□□□□□ -0.88
LDLR-210ENST00000559340 SLC2A11Q9BYW1 496 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 LINC00597Q9H2U6 94 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 EBF3Q9H4W6 596 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 DHX35Q9H5Z1 703 aaKnown RBP9.54□□□□□ -0.88
LDLR-210ENST00000559340 ECT2Q9H8V3 914 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 ZWILCHQ9H900 591 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 C11orf16Q9NQ32 467 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 KCND1Q9NSA2 647 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 TRMT1Q9NXH9 659 aaKnown RBP9.54□□□□□ -0.88
LDLR-210ENST00000559340 MARK1Q9P0L2 795 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 RCOR3Q9P2K3 495 aaPredicted RBP9.54□□□□□ -0.88
LDLR-210ENST00000559340 PPARGC1AQ9UBK2 798 aaKnown RBP9.54□□□□□ -0.88
LDLR-210ENST00000559340 SALL4Q9UJQ4 1053 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 DUSP12Q9UNI6 340 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 TFR2Q9UP52 801 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 AP4E1Q9UPM8 1137 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 HS3ST4Q9Y661 456 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 CHD5Q8TDI0 1954 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 SHROOM3Q8TF72 1996 aa9.54□□□□□ -0.88
LDLR-210ENST00000559340 GRID2IPA4D2P6 1211 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 EEF2KO00418 725 aaKnown RBP9.53□□□□□ -0.88
LDLR-210ENST00000559340 MAN2B1O00754 1011 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 FGF10O15520 208 aaPredicted RBP9.53□□□□□ -0.88
LDLR-210ENST00000559340 HOXC11O43248 304 aaPredicted RBP9.53□□□□□ -0.88
LDLR-210ENST00000559340 SRGAP2O75044 1071 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 CLDN11O75508 207 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 ASGR2P07307 311 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 RARAP10276 462 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 ADH5P11766 374 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 CTNNA2P26232 953 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 CDH4P55283 916 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 CDH6P55285 790 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 TPI1P60174 286 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 DPYSL2Q16555 572 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 C5orf22Q49AR2 442 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 FAM133BQ5BKY9 247 aaKnown RBP9.53□□□□□ -0.88
LDLR-210ENST00000559340 LY6G5CQ5SRR4 150 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 FBXL22Q6P050 247 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 RHBDF2Q6PJF5 856 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 TPGS1Q6ZTW0 290 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 CHST9Q7L1S5 443 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 RALGPS2Q86X27 583 aaPredicted RBP9.53□□□□□ -0.88
LDLR-210ENST00000559340 VSIG1Q86XK7 387 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 SUGP1Q8IWZ8 645 aaKnown RBP9.53□□□□□ -0.88
LDLR-210ENST00000559340 RCOR2Q8IZ40 523 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 ARFGAP1Q8N6T3 406 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 CCDC185Q8N715 623 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 CCDC26Q8TAB7 109 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 HSPH1Q92598 858 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 WBP2Q969T9 261 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 TBC1D31Q96DN5 1066 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 RBM41Q96IZ5 413 aaKnown RBP9.53□□□□□ -0.88
LDLR-210ENST00000559340 PRMT1Q99873 361 aaKnown RBP9.53□□□□□ -0.88
LDLR-210ENST00000559340 SNRNP25Q9BV90 132 aaKnown RBP9.53□□□□□ -0.88
LDLR-210ENST00000559340 BBS2Q9BXC9 721 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 MAK16Q9BXY0 300 aaKnown RBP9.53□□□□□ -0.88
LDLR-210ENST00000559340 ADAM33Q9BZ11 813 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 ZYG11BQ9C0D3 744 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 CD320Q9NPF0 282 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 CALCOCO1Q9P1Z2 691 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 WNT16Q9UBV4 365 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 TRIM10Q9UDY6 481 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 VANGL2Q9ULK5 521 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 PCDHA3Q9Y5H8 950 aa9.53□□□□□ -0.88
LDLR-210ENST00000559340 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.52□□□□□ -0.89
LDLR-210ENST00000559340 GOLGA6L7A0A1B0GV03 622 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 A0A1B0GVM2 712 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 FAM86C2PA6NEL3 165 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 TCAF2A6NFQ2 919 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 DRGXA6NNA5 263 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 ZNF487B1APH4 448 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 E9PAM4 449 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 H0Y626 953 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 CREB3O43889 395 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 TSPAN3O60637 253 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 TBL1XO60907 577 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 ZRANB2O95218 330 aaKnown RBP eCLIP9.52□□□□□ -0.89
LDLR-210ENST00000559340 TUBB4AP04350 444 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 TNNT1P13805 278 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 TYRP14679 529 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 ARSAP15289 507 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 ZFXP17010 805 aaPredicted RBP9.52□□□□□ -0.89
LDLR-210ENST00000559340 RHOQP17081 205 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 SLC6A4P31645 630 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 GJC1P36383 396 aa9.52□□□□□ -0.89
LDLR-210ENST00000559340 ETFBP38117 255 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms