RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SP2Q02086 613 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 TAP1Q03518 808 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 PTPN11Q06124 597 aaPredicted RBP11.63□□□□□ -0.55
LDLR-208ENST00000558518 ATP1A4Q13733 1029 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 ANO4Q32M45 955 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 EEF1DP3Q658K8 133 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 RPS27LQ71UM5 84 aaKnown RBP11.63□□□□□ -0.55
LDLR-208ENST00000558518 STRA8Q7Z7C7 330 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 PQLC3Q8N755 202 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 MCUQ8NE86 351 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 PCDH19Q8TAB3 1148 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 NLRP7Q8WX94 980 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 AKT1S1Q96B36 256 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 AGAP2Q99490 1192 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 SLC4A5Q9BY07 1137 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 DDX43Q9NXZ2 648 aaKnown RBP11.63□□□□□ -0.55
LDLR-208ENST00000558518 PHF24Q9UPV7 400 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 SPDYE2BA6NHP3 402 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 TMEM233B4DJY2 109 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 VILLO15195 856 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 PMM2O15305 246 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 PLIN3O60664 434 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 SPDYE6P0CI01 402 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 TSPAN8P19075 237 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 EIF4BP23588 611 aaKnown RBP11.63□□□□□ -0.55
LDLR-208ENST00000558518 NAGLUP54802 743 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 POU5F1BQ06416 359 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 GEN1Q17RS7 908 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 CLVS1Q8IUQ0 354 aaPredicted RBP11.63□□□□□ -0.55
LDLR-208ENST00000558518 ZNF786Q8N393 782 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 ZNF513Q8N8E2 541 aaPredicted RBP11.63□□□□□ -0.55
LDLR-208ENST00000558518 EXT2Q93063 718 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 TSNARE1Q96NA8 513 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 SERPINI1Q99574 410 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 NRDE2Q9H7Z3 1164 aa11.63□□□□□ -0.55
LDLR-208ENST00000558518 A0A0J9YVX5 310 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 YDJCA8MPS7 323 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 SPAG6O75602 509 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 PTPN1P18031 435 aaKnown RBP11.62□□□□□ -0.55
LDLR-208ENST00000558518 CRHR1P34998 444 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 PLK1P53350 603 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 PLOD1Q02809 727 aaPredicted RBP11.62□□□□□ -0.55
LDLR-208ENST00000558518 NME3Q13232 169 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 MAP7D1Q3KQU3 841 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 MBLAC2Q68D91 279 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 UGT2A3Q6UWM9 527 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 IFNEQ86WN2 208 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 DSELQ8IZU8 1212 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 PNPLA1Q8N8W4 532 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 NSUN6Q8TEA1 469 aaKnown RBP11.62□□□□□ -0.55
LDLR-208ENST00000558518 CLEC4CQ8WTT0 213 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 PTPRHQ9HD43 1115 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 SMIM31A0A1B0GVY4 71 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 ARHGAP10A1A4S6 786 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 ARHGEF37A1IGU5 675 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 TK2O00142 265 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 CHADO15335 359 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 HCRTO43612 131 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 GLRA3O75311 464 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 TRMUO75648 421 aaKnown RBP11.62□□□□□ -0.55
LDLR-208ENST00000558518 LSM8O95777 96 aaKnown RBP11.62□□□□□ -0.55
LDLR-208ENST00000558518 CLIC3O95833 236 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 OATP04181 439 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 CLCN3P51790 818 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 MS4A2Q01362 244 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 ZNF460Q14592 562 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 PCLAFQ15004 111 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 MTX3Q5HYI7 312 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 LRRC8EQ6NSJ5 796 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 PACS1Q6VY07 963 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 KYQ8NBH2 561 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 COLGALT1Q8NBJ5 622 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 USP33Q8TEY7 942 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 CPB2Q96IY4 423 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 RPF1Q9H9Y2 349 aaKnown RBP11.62□□□□□ -0.55
LDLR-208ENST00000558518 SYBUQ9NX95 663 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 TSPAN16Q9UKR8 245 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 SF3B1O75533 1304 aaKnown RBP eCLIP11.62□□□□□ -0.559e-6■■■■■ 68.9
LDLR-208ENST00000558518 FAM149AA5PLN7 773 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 H0YCG3 227 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 AKAP10O43572 662 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 CKMT2P17540 419 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 AOC1P19801 751 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 PIK3R1P27986 724 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 STILQ15468 1287 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 SH3D19Q5HYK7 790 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 AAGABQ6PD74 315 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 NAPRTQ6XQN6 538 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 SH2D5Q6ZV89 423 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 ANKRD23Q86SG2 305 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 FAM151AQ8WW52 585 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 NTPCRQ9BSD7 190 aaKnown RBP11.62□□□□□ -0.55
LDLR-208ENST00000558518 MRPL4Q9BYD3 311 aaKnown RBP11.62□□□□□ -0.55
LDLR-208ENST00000558518 ELOVL4Q9GZR5 314 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 SDCBP2Q9H190 292 aa11.62□□□□□ -0.55
LDLR-208ENST00000558518 KLHL8Q9P2G9 620 aaPredicted RBP11.62□□□□□ -0.55
LDLR-208ENST00000558518 LYPLA2O95372 231 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 TNFAIP8O95379 198 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 PSMB4P28070 264 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 NDST1P52848 882 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms