RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 CCDC22O60826 627 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 GLRA3O75311 464 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 ALDH1A2O94788 518 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 MYL3P08590 195 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 GOT1P17174 413 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 PTPN1P18031 435 aaKnown RBP7.48□□□□□ -1.21
VPS13C-206ENST00000558338 BGNP21810 368 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 CALB2P22676 271 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 LMO2P25791 158 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 MAP2K2P36507 400 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 GJA9P57773 515 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 DEUP1Q05D60 604 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 SCAPQ12770 1279 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 IFRD2Q12894 506 aaPredicted RBP7.48□□□□□ -1.21
VPS13C-206ENST00000558338 SLC10A2Q12908 348 aaPredicted RBP7.48□□□□□ -1.21
VPS13C-206ENST00000558338 MTM1Q13496 603 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 KRT72Q14CN4 511 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 TBCCQ15814 346 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 NBPF20Q3BBV1 942 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 ARL13BQ3SXY8 428 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 C4orf46Q504U0 113 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 TAF1BQ53T94 588 aaPredicted RBP7.48□□□□□ -1.21
VPS13C-206ENST00000558338 DCAF6Q58WW2 860 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 INTS6LQ5JSJ4 861 aaKnown RBP7.48□□□□□ -1.21
VPS13C-206ENST00000558338 WASHC2DQ5SRD0 308 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 TWF2Q6IBS0 349 aaKnown RBP7.48□□□□□ -1.21
VPS13C-206ENST00000558338 Q6ZNB5 142 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 DENND5BQ6ZUT9 1274 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 CLNKQ7Z7G1 428 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 RSPH3Q86UC2 560 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 FAM131BQ86XD5 332 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 ARHGAP24Q8N264 748 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 SLC43A3Q8NBI5 491 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 COLGALT1Q8NBJ5 622 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 E2F7Q96AV8 911 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 SKA1Q96BD8 255 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 THOC1Q96FV9 657 aaKnown RBP7.48□□□□□ -1.21
VPS13C-206ENST00000558338 RSRC1Q96IZ7 334 aaKnown RBP7.48□□□□□ -1.21
VPS13C-206ENST00000558338 SYT17Q9BSW7 474 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 TRIM62Q9BVG3 475 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 ADAM33Q9BZ11 813 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 WWP1Q9H0M0 922 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 TLE6Q9H808 572 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 EBF2Q9HAK2 575 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 CDHR5Q9HBB8 845 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 MOCS1Q9NZB8 636 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 MCM8Q9UJA3 840 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 PTCH2Q9Y6C5 1203 aa7.48□□□□□ -1.21
VPS13C-206ENST00000558338 A0A0G2JND7 137 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 ERI2A8K979 691 aaKnown RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 M0QYT0 321 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 RNF103O00237 685 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 GABRDO14764 452 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 CAPN9O14815 690 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 HGSO14964 777 aaPredicted RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 TREHO43280 583 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 RFPL1O75677 317 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 MAP3K6O95382 1288 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 ZNF865P0CJ78 1059 aaPredicted RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 CSH1P0DML2 217 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 CSH2P0DML3 217 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 VAV1P15498 845 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 TFE3P19532 575 aaPredicted RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 AMPD1P23109 780 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 TKTP29401 623 aaKnown RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 HOXC8P31273 242 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 SERPINB6P35237 376 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 RGS2P41220 211 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 HCAR3P49019 387 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 ATXN1P54253 815 aaKnown RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 TMPRSS15P98073 1019 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 AP1B1Q10567 949 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 DPYSQ14117 519 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 FRG1Q14331 258 aaKnown RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 SPANXN3Q5MJ09 141 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 MTDHQ86UE4 582 aaKnown RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 OSTM1Q86WC4 334 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 CRLF3Q8IUI8 442 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 NUDCD3Q8IVD9 361 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 SMG8Q8ND04 991 aaKnown RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 AGAP11Q8TF27 550 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 SOCS4Q8WXH5 440 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 TBC1D31Q96DN5 1066 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 PGAP3Q96FM1 320 aaPredicted RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 PPP1R10Q96QC0 940 aaKnown RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 TMEM120AQ9BXJ8 343 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 CXCL16Q9H2A7 254 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 STN1Q9H668 368 aaKnown RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 CNGB3Q9NQW8 809 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 NPDC1Q9NQX5 325 aaPredicted RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 CHST12Q9NRB3 414 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 KLK14Q9P0G3 267 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 SIRPGQ9P1W8 387 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 TXNDC16Q9P2K2 825 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 HAO1Q9UJM8 370 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 DCTN4Q9UJW0 460 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 ADAM28Q9UKQ2 775 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 TRPV2Q9Y5S1 764 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 TSC2P49815 1807 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 ARHGEF37A1IGU5 675 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms