RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 TDGF1P13385 188 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 HNRNPLP14866 589 aaKnown RBP eCLIP8.97□□□□□ -0.975e-18■■■■□ 21.7
USP3-208ENST00000558285 OXTRP30559 389 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 SDC4P31431 198 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 TNNT3P45378 269 aaPredicted RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 PGFP49763 221 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 GAS6Q14393 721 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 TSR1Q2NL82 804 aaKnown RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 TEX35Q5T0J7 233 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 FYB2Q5VWT5 728 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 SERPINA13PQ6UXR4 307 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 LPCAT2Q7L5N7 544 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 BHLHA9Q7RTU4 235 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 DEFB106AQ8N104 65 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 C12orf50Q8NA57 414 aaPredicted RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 IL17RCQ8NAC3 791 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 EPS8L1Q8TE68 723 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 NDRG1Q92597 394 aaKnown RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 TRIM11Q96F44 468 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 SLC2A13Q96QE2 648 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 NCAPGQ9BPX3 1015 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 WDCPQ9H6R7 721 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 FBRSL1Q9HCM7 1045 aaKnown RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 ELOVL2Q9NXB9 296 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 KIAA1522Q9P206 1035 aaPredicted RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 FBXO10Q9UK96 956 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 USP18Q9UMW8 372 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 BZW2Q9Y6E2 419 aaKnown RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 MUC3AQ02505 3323 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 C5orf42Q9H799 3197 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 M0QYT0 321 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 AP5Z1O43299 807 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 TBL1XO60907 577 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 NDUFS2O75306 463 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 LUC7L3O95232 432 aaKnown RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 ADCY5O95622 1261 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 PABPC1P11940 636 aaKnown RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 FECHP22830 423 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 KIR2DL1P43626 348 aaPredicted RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 GABRB2P47870 512 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 SULT1E1P49888 294 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 DEUP1Q05D60 604 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 CCDC15Q0P6D6 951 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 NME3Q13232 169 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 GAB4Q2WGN9 574 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 TTC31Q49AM3 519 aaPredicted RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 FNDC3BQ53EP0 1204 aaKnown RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 PIK3R6Q5UE93 754 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 OLFML1Q6UWY5 402 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 FAM183BPQ6ZVS7 135 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 ASCL5Q7RTU5 278 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 TAC4Q86UU9 113 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 RASSF3Q86WH2 238 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 C12orf40Q86WS4 652 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 GOLGA6L1Q8N7Z2 621 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 KDM1BQ8NB78 822 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 SUMF1Q8NBK3 374 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 HMGB4Q8WW32 186 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 FCRL2Q96LA5 508 aaPredicted RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 CCDC114Q96M63 670 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 MYCBPQ99417 103 aaPredicted RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 GANQ9H2C0 597 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 RASSF4Q9H2L5 321 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 RETREG1Q9H6L5 497 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 PLK2Q9NYY3 685 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 CWC15Q9P013 229 aaKnown RBP8.97□□□□□ -0.97
USP3-208ENST00000558285 GGA2Q9UJY4 613 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 SIK3Q9Y2K2 1263 aa8.97□□□□□ -0.97
USP3-208ENST00000558285 SYNJ2BP-COX16A0A087WUM0 186 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.96□□□□□ -0.98
USP3-208ENST00000558285 A0A1B0GVM2 712 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 TCAF2A6NFQ2 919 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 TSPAN3O60637 253 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 TACR2P21452 398 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 TNFAIP3P21580 790 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 RDXP35241 583 aaKnown RBP8.96□□□□□ -0.98
USP3-208ENST00000558285 HOXD12P35452 270 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 ETFBP38117 255 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 JAM2P57087 298 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 RNASE9P60153 205 aaKnown RBP8.96□□□□□ -0.98
USP3-208ENST00000558285 ZBTB16Q05516 673 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 ZNF177Q13360 481 aaPredicted RBP8.96□□□□□ -0.98
USP3-208ENST00000558285 ASIC2Q16515 512 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 SLC25A52Q3SY17 297 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 ZC3H12AQ5D1E8 599 aaKnown RBP8.96□□□□□ -0.98
USP3-208ENST00000558285 MS4A13Q5J8X5 152 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 SYCP2LQ5T4T6 812 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 SFMBT2Q5VUG0 894 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 NAA35Q5VZE5 725 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 CHST9Q7L1S5 443 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 DSG4Q86SJ6 1040 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 NOP9Q86U38 636 aaKnown RBP8.96□□□□□ -0.98
USP3-208ENST00000558285 LGI2Q8N0V4 545 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 PHTF2Q8N3S3 785 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 CARNMT1Q8N4J0 409 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.96□□□□□ -0.98
USP3-208ENST00000558285 FIBINQ8TAL6 211 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 CLEC4CQ8WTT0 213 aa8.96□□□□□ -0.98
USP3-208ENST00000558285 DDX1Q92499 740 aaKnown RBP8.96□□□□□ -0.98
USP3-208ENST00000558285 TSC1Q92574 1164 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms