RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 RAP1GAP2Q684P5 730 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 LGI2Q8N0V4 545 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 ARFGAP1Q8N6T3 406 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 ACTRT1Q8TDG2 376 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 BPIFB1Q8TDL5 484 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 USP13Q92995 863 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-220ENST00000555634 ATP2A3Q93084 1043 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 MSLNLQ96KJ4 702 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 RUNDC3BQ96NL0 473 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 ASB16Q96NS5 453 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 SLC22A12Q96S37 553 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 KCTD15Q96SI1 283 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-220ENST00000555634 CALCOCO1Q9P1Z2 691 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 PPARGC1AQ9UBK2 798 aaKnown RBP11.56□□□□□ -0.56
SHMT2-220ENST00000555634 VANGL2Q9ULK5 521 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 RAD54BQ9Y620 910 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 HS3ST4Q9Y661 456 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 TICRRQ7Z2Z1 1910 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 COL6A3P12111 3177 aa11.56□□□□□ -0.56
SHMT2-220ENST00000555634 LAMA3Q16787 3333 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 hCG_1818297A0A087WSY0 165 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 A0A1B0GVM2 712 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 TCAF2A6NFQ2 919 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 H3BQ06 376 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-220ENST00000555634 CCDC188H7C350 402 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 KRIT1O00522 736 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 PPP1R12AO14974 1030 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-220ENST00000555634 MCF2LO15068 1137 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 MOSPD3O75425 235 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 STK10O94804 968 aaKnown RBP11.55□□□□□ -0.56
SHMT2-220ENST00000555634 LRIG2O94898 1065 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 NFATC1O95644 943 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 PYGMP11217 842 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 GOT1P17174 413 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 DYNLT1P63172 113 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 LMNB2Q03252 620 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 EIF4EBP2Q13542 120 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-220ENST00000555634 AUHQ13825 339 aaKnown RBP11.55□□□□□ -0.56
SHMT2-220ENST00000555634 PDGFRLQ15198 375 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 ZNF77Q15935 545 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 MPPE1Q53F39 396 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 C6orf118Q5T5N4 469 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 PIK3R6Q5UE93 754 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 TXNRD3NBQ6F5E7 133 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 MFSD7Q6UXD7 560 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 HTR3DQ70Z44 454 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 ZNF354CQ86Y25 554 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 CPNE8Q86YQ8 564 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 SLC13A5Q86YT5 568 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-220ENST00000555634 PLCD3Q8N3E9 789 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 CPXM2Q8N436 756 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 LZTR1Q8N653 840 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 DDI1Q8WTU0 396 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 DEPDC1BQ8WUY9 529 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 RAPGEF5Q92565 580 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 P3H4Q92791 437 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 EXOC4Q96A65 974 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 ZFRQ96KR1 1074 aaKnown RBP11.55□□□□□ -0.56
SHMT2-220ENST00000555634 GUCD1Q96NT3 240 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 CSPG4P5Q96PW8 444 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 ADAM33Q9BZ11 813 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 S1PR5Q9H228 398 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 POMKQ9H5K3 350 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 GKN1Q9NS71 199 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 MTMR10Q9NXD2 777 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 AGO1Q9UL18 857 aaKnown RBP11.55□□□□□ -0.56
SHMT2-220ENST00000555634 TTC7AQ9ULT0 858 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-220ENST00000555634 MRFAP1Q9Y605 127 aa11.55□□□□□ -0.56
SHMT2-220ENST00000555634 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-220ENST00000555634 CTAGE15A4D2H0 777 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 APOC4-APOC2K7ER74 178 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 NCAM2O15394 837 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 CST8O60676 142 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 CLDN11O75508 207 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 NEBLO76041 1014 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 PRAMEF12O95522 483 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 APOC2P02655 101 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 CTAGE8P0CG41 777 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 RHOQP17081 205 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 MX2P20592 715 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 NR2C2P49116 596 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 MAPKAPK2P49137 400 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 MLLT6P55198 1093 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-220ENST00000555634 AMPD2Q01433 879 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 DLX2Q07687 328 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-220ENST00000555634 NR1H3Q13133 447 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 ZNF177Q13360 481 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-220ENST00000555634 PREPLQ4J6C6 727 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-220ENST00000555634 RAB6CQ53S08 254 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 FAM78AQ5JUQ0 283 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 DCAF12L1Q5VU92 463 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 BBS12Q6ZW61 710 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 CYP4V2Q6ZWL3 525 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-220ENST00000555634 CHST9Q7L1S5 443 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 CTAGE6Q86UF2 777 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 CTAGE4Q8IX94 777 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 CPA6Q8N4T0 437 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 MAFAQ8NHW3 353 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-220ENST00000555634 FAM71BQ8TC56 605 aa11.54□□□□□ -0.56
SHMT2-220ENST00000555634 GRK7Q8WTQ7 553 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms