RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 FNIP2Q9P278 1114 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 NAALADL1Q9UQQ1 740 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 MTCL1Q9Y4B5 1905 aaKnown RBP7.92□□□□□ -1.14
LIMA1-216ENST00000552909 SMIM31A0A1B0GVY4 71 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 A8MXQ7 604 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 RASA4BC9J798 803 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 RASA4O43374 803 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 THAP12O43422 761 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 ATP9BO43861 1147 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 LRRN2O75325 713 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 RFPL2O75678 378 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 ZNF189O75820 626 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 IL18RAPO95256 599 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 ASMTLO95671 621 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 HNRNPCP07910 306 aaKnown RBP eCLIP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 TNNI1P19237 187 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 SERPINB3P29508 390 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 OR1D2P34982 312 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 JAM2P57087 298 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 HPCAP84074 193 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 SULT2A1Q06520 285 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 ELAVL2Q12926 359 aaKnown RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 CBX3Q13185 183 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 MPP3Q13368 585 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 TMEM259Q4ZIN3 620 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 CFAP157Q5JU67 520 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 FYB2Q5VWT5 728 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 GJB7Q6PEY0 223 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 TMC5Q6UXY8 1006 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 MTDHQ86UE4 582 aaKnown RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 RIBC1Q8N443 379 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 ZBTB8BQ8NAP8 495 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 ZNF516Q92618 1163 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 CASP10Q92851 521 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 MPP4Q96JB8 637 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 SLX1AQ9BQ83 275 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 CCDC77Q9BR77 488 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 YIPF2Q9BWQ6 316 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 MTMR12Q9C0I1 747 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 MAN1C1Q9NR34 630 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 WHRNQ9P202 907 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 HSFX1Q9UBD0 423 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 SIX4Q9UIU6 781 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 PAIP2BQ9ULR5 123 aaKnown RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 SSX2IPQ9Y2D8 614 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 WDR37Q9Y2I8 494 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 DERAQ9Y315 318 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 CDY1Q9Y6F8 540 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 A0A0J9YVX5 310 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 TMEM221A6NGB7 291 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 M0QZQ0 153 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 XPOTO43592 962 aaKnown RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 TBC1D4O60343 1298 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 OPHN1O60890 802 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 GLUD1P00367 558 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 ITGB3P05106 788 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 STAT1P42224 750 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 MCCD1P59942 119 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 SMAD4Q13485 552 aaKnown RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 THOC5Q13769 683 aaKnown RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 MRPL58Q14197 206 aaKnown RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 PSMD6Q15008 389 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 SMAD2Q15796 467 aaKnown RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 PDK4Q16654 411 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 CYP1B1Q16678 543 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 KYNUQ16719 465 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 P3H1Q32P28 736 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 RARS2Q5T160 578 aaKnown RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 KRT39Q6A163 491 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 SV2AQ7L0J3 742 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 GPR65Q8IYL9 337 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 ARHGAP24Q8N264 748 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 PDCD7Q8N8D1 485 aaKnown RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 SLC30A5Q8TAD4 765 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 ZNF398Q8TD17 642 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 WDR60Q8WVS4 1066 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 SUSD6Q92537 303 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 SPOCK2Q92563 424 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 SENP8Q96LD8 212 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 TSPAN18Q96SJ8 248 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 UHRF1Q96T88 793 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 ECSITQ9BQ95 431 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 INTS2Q9H0H0 1204 aaKnown RBP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 TMEM8AQ9HCN3 771 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 SIX2Q9NPC8 291 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.91□□□□□ -1.14
LIMA1-216ENST00000552909 NDUFA13Q9P0J0 144 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 MTRRQ9UBK8 725 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 WASF2Q9Y6W5 498 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 MYO10Q9HD67 2058 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 C2orf16Q68DN1 1984 aa7.91□□□□□ -1.14
LIMA1-216ENST00000552909 DLL1O00548 723 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 SYN3O14994 580 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 P4HA2O15460 535 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 HAUS5O94927 633 aa7.9□□□□□ -1.14
LIMA1-216ENST00000552909 CST3P01034 146 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-216ENST00000552909 HOXB8P17481 243 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-216ENST00000552909 POLR2BP30876 1174 aaKnown RBP7.9□□□□□ -1.14
LIMA1-216ENST00000552909 GTF2H1P32780 548 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms