RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545		I6L893	689 aa	Predicted RBP	10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	EEF2K	O00418	725 aa	Known RBP	10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	PSTPIP1	O43586	416 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	NARS	O43776	548 aa	Known RBP	10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	KRT1	P04264	644 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	ADH5	P11766	374 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	SRF	P11831	508 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	EPHB2	P29323	1055 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	L1CAM	P32004	1257 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	DEK	P35659	375 aa	Known RBP	10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	ARL4A	P40617	200 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	TPI1	P60174	286 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	GNG11	P61952	73 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	RPS24	P62847	133 aa	Known RBP	10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	AMPD2	Q01433	879 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	PFKP	Q01813	784 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	SLC25A11	Q02978	314 aa	Known RBP	10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	RPS6KA1	Q15418	735 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	CA9	Q16790	459 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	ATP13A4	Q4VNC1	1196 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	LRRC38	Q5VT99	294 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	RHBDF2	Q6PJF5	856 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	CPXM2	Q8N436	756 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	UBL4B	Q8N7F7	174 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	NAT16	Q8N8M0	369 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	LRRC57	Q8N9N7	239 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	HJURP	Q8NCD3	748 aa	Predicted RBP	10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	TEKT4	Q8WW24	435 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	TBC1D31	Q96DN5	1066 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	NECAB3	Q96P71	396 aa	Predicted RBP	10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	KCTD15	Q96SI1	283 aa	Predicted RBP	10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	HPS4	Q9NQG7	708 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	DDX56	Q9NY93	547 aa	Known RBP	10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	GTSE1	Q9NYZ3	720 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	FBXL21	Q9UKT6	434 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	SORCS3	Q9UPU3	1222 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	ZKSCAN5	Q9Y2L8	839 aa		10.49	□□□□□ -0.73
CPSF7-221	ENST00000543545	NOTCH4	Q99466	2003 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	CCDC66	A2RUB6	948 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	MIF4GD	A9UHW6	222 aa	Known RBP	10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	PI4K2B	G5E9Z4	385 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	FAM72C	H0Y354	149 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545		H0Y626	953 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	LRIG2	O94898	1065 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	CYP17A1	P05093	508 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	TYR	P14679	529 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	CETN2	P41208	172 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	RWDD2B	P57060	319 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	ZNF177	Q13360	481 aa	Predicted RBP	10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	PDK2	Q15119	407 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	FAM72A	Q5TYM5	149 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	FAM72D	Q6L9T8	149 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	POLN	Q7Z5Q5	900 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	NT5DC3	Q86UY8	548 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	FAM72B	Q86X60	149 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	CIR1	Q86X95	450 aa	Predicted RBP	10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	CCDC50	Q8IVM0	306 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	FAM217A	Q8IXS0	508 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	CARNMT1	Q8N4J0	409 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	RAPGEF5	Q92565	580 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	KRT35	Q92764	455 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	IGSF8	Q969P0	613 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	RNF25	Q96BH1	459 aa	Predicted RBP	10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	MYEOV	Q96EZ4	313 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	XPO6	Q96QU8	1125 aa	Known RBP	10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	UHRF1	Q96T88	793 aa	Predicted RBP	10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	PRMT1	Q99873	361 aa	Known RBP	10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	CALN1	Q9BXU9	219 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	MAK16	Q9BXY0	300 aa	Known RBP	10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	ZYG11B	Q9C0D3	744 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	PCDH18	Q9HCL0	1135 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	MPP6	Q9NZW5	540 aa		10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	PACSIN2	Q9UNF0	486 aa	Predicted RBP	10.48	□□□□□ -0.73
CPSF7-221	ENST00000543545	DRGX	A6NNA5	263 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	ZRANB2	O95218	330 aa	Known RBP eCLIP	10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	GOT1	P17174	413 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	KDELR1	P24390	212 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	CTNNA2	P26232	953 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	GJA4	P35212	333 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	SOX9	P48436	509 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	SGSH	P51688	502 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	ZNF135	P52742	658 aa	Predicted RBP	10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	CDH4	P55283	916 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	CDH18	Q13634	790 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	DPYSL2	Q16555	572 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	SLC44A4	Q53GD3	710 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	TTC39B	Q5VTQ0	682 aa	Predicted RBP	10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	RFX8	Q6ZV50	586 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	TFAP2D	Q7Z6R9	452 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	MFN1	Q8IWA4	741 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	RCOR2	Q8IZ40	523 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	SLC35F6	Q8N357	371 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	DNASE1L2	Q92874	299 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	EXOC4	Q96A65	974 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	PRICKLE1	Q96MT3	831 aa	Predicted RBP	10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	C8orf33	Q9H7E9	229 aa	Predicted RBP	10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	CATSPERB	Q9H7T0	1116 aa		10.47	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 31 ms