RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 LRRC38Q5VT99 294 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 NUGGCQ68CJ6 796 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 NADSYN1Q6IA69 706 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 TANGO2Q6ICL3 276 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 POLNQ7Z5Q5 900 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 UNC45BQ8IWX7 931 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 KATNAL2Q8IYT4 538 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 ATP6V0D2Q8N8Y2 350 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 MAFAQ8NHW3 353 aaPredicted RBP9.67□□□□□ -0.86
DDX55-208ENST00000541259 TEKT4Q8WW24 435 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 ZNF592Q92610 1267 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 SMARCD2Q92925 531 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 NTAN1Q96AB6 310 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 MYEOVQ96EZ4 313 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 ASB16Q96NS5 453 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 NAPGQ99747 312 aaPredicted RBP9.67□□□□□ -0.86
DDX55-208ENST00000541259 PLA2G2FQ9BZM2 168 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 SIK2Q9H0K1 926 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.67□□□□□ -0.86
DDX55-208ENST00000541259 GDE1Q9NZC3 331 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 AGO1Q9UL18 857 aaKnown RBP9.67□□□□□ -0.86
DDX55-208ENST00000541259 HS3ST4Q9Y661 456 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 CCDC66A2RUB6 948 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 LRRD1A4D1F6 860 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 CTAGE9A4FU28 777 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 MIF4GDA9UHW6 222 aaKnown RBP9.66□□□□□ -0.86
DDX55-208ENST00000541259 KCNK3O14649 394 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 ACSL4O60488 711 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 TSPAN3O60637 253 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 SRGAP2O75044 1071 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 KRT1P04264 644 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 SLC2A3P11169 496 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 PYGMP11217 842 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 LAMP2P13473 410 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 TACR2P21452 398 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 IL4RP24394 825 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 WEE1P30291 646 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 HARS2P49590 506 aaKnown RBP9.66□□□□□ -0.86
DDX55-208ENST00000541259 MLLT6P55198 1093 aaPredicted RBP9.66□□□□□ -0.86
DDX55-208ENST00000541259 CDH6P55285 790 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 RWDD2BP57060 319 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 USP4Q13107 963 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 MMRN1Q13201 1228 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 SEMA3BQ13214 749 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 AUHQ13825 339 aaKnown RBP9.66□□□□□ -0.86
DDX55-208ENST00000541259 DPYSL2Q16555 572 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 ARL13BQ3SXY8 428 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 FAM133BQ5BKY9 247 aaKnown RBP9.66□□□□□ -0.86
DDX55-208ENST00000541259 PPP6R3Q5H9R7 873 aaPredicted RBP9.66□□□□□ -0.86
DDX55-208ENST00000541259 MS4A13Q5J8X5 152 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 EFHC2Q5JST6 749 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 ZFYVE27Q5T4F4 411 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 RAP1GAP2Q684P5 730 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 RFWD3Q6PCD5 774 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 MFSD7Q6UXD7 560 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 Q6ZNB5 142 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 HTR3DQ70Z44 454 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 BBS7Q8IWZ6 715 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 CELF5Q8N6W0 485 aaKnown RBP9.66□□□□□ -0.86
DDX55-208ENST00000541259 UBL4BQ8N7F7 174 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 KCTD6Q8NC69 237 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 FAM71BQ8TC56 605 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 P2RY11Q96G91 374 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 BTN2A3PQ96KV6 586 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 NECTIN4Q96NY8 510 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 HAPLN3Q96S86 360 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 PRMT1Q99873 361 aaKnown RBP9.66□□□□□ -0.86
DDX55-208ENST00000541259 HERPUD2Q9BSE4 406 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 RPP25Q9BUL9 199 aaKnown RBP9.66□□□□□ -0.86
DDX55-208ENST00000541259 OSBPL2Q9H1P3 480 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 LINC00597Q9H2U6 94 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 PCDH18Q9HCL0 1135 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 DDX56Q9NY93 547 aaKnown RBP9.66□□□□□ -0.86
DDX55-208ENST00000541259 OR12D3Q9UGF7 316 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 SLC12A6Q9UHW9 1150 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 ZMYM5Q9UJ78 669 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 SH3BP1Q9Y3L3 701 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 TICRRQ7Z2Z1 1910 aa9.66□□□□□ -0.86
DDX55-208ENST00000541259 E2F8A0AVK6 867 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 HEPACAM2A8MVW5 462 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 ZNF185O15231 689 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 CREB3O43889 395 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 LRIG2O94898 1065 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 ZRANB2O95218 330 aaKnown RBP eCLIP9.65□□□□□ -0.86
DDX55-208ENST00000541259 KRT10P13645 584 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 GOT1P17174 413 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 NDUFV2P19404 249 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 AMPD1P23109 780 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 IRAK1P51617 712 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 SGSHP51688 502 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 AIF1P55008 147 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 VCPP55072 806 aaKnown RBP9.65□□□□□ -0.86
DDX55-208ENST00000541259 AMPD2Q01433 879 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 ADCY2Q08462 1091 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 DPYSL3Q14195 570 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 KRT81Q14533 505 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 LEXMQ3ZCV2 418 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 PAPD7Q5XG87 772 aaKnown RBP9.65□□□□□ -0.86
DDX55-208ENST00000541259 PARM1Q6UWI2 310 aa9.65□□□□□ -0.86
DDX55-208ENST00000541259 SPOCD1Q6ZMY3 1216 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms