RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 TOR4AQ9NXH8 423 aa8.73□□□□□ -1.01
CHD4-208ENST00000540960 TAS2R14Q9NYV8 317 aa8.73□□□□□ -1.01
CHD4-208ENST00000540960 SIX4Q9UIU6 781 aa8.73□□□□□ -1.01
CHD4-208ENST00000540960 DSEQ9UL01 958 aa8.73□□□□□ -1.01
CHD4-208ENST00000540960 UTP11Q9Y3A2 253 aaKnown RBP8.73□□□□□ -1.01
CHD4-208ENST00000540960 PCDHB9Q9Y5E1 797 aa8.73□□□□□ -1.01
CHD4-208ENST00000540960 POLQO75417 2590 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 KNTC1P50748 2209 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 SMIM28A0A1B0GU29 152 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 SIGLEC16A6NMB1 481 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 KPNA7A9QM74 516 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 PIRO00625 290 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 SART1O43290 800 aaKnown RBP8.72□□□□□ -1.01
CHD4-208ENST00000540960 RNF8O76064 485 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 ZRANB2O95218 330 aaKnown RBP eCLIP8.72□□□□□ -1.01
CHD4-208ENST00000540960 CFIP05156 583 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 KRT7P08729 469 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 COMTP21964 271 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 LHX1P48742 406 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 FNTAP49354 379 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 CLCN6P51797 869 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 DGKEP52429 567 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 RAD23BP54727 409 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 WNT7BP56706 349 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 TNK2Q07912 1038 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 MAMLD1Q13495 774 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 HNRNPDQ14103 355 aaKnown RBP8.72□□□□□ -1.01
CHD4-208ENST00000540960 C9orf57Q5W0N0 161 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 ARHGAP17Q68EM7 881 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 CC2D1AQ6P1N0 951 aaPredicted RBP8.72□□□□□ -1.01
CHD4-208ENST00000540960 LRRC69Q6ZNQ3 347 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 ARCQ7LC44 396 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 POLNQ7Z5Q5 900 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 MRPL10Q7Z7H8 261 aaKnown RBP8.72□□□□□ -1.01
CHD4-208ENST00000540960 CROCCP2Q86T23 111 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 CRYBG2Q8N1P7 616 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 NIPA2Q8N8Q9 360 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 CEP120Q8N960 986 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 BBOF1Q8ND07 529 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 EXD1Q8NHP7 514 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 OLIG1Q8TAK6 271 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 WHAMMQ8TF30 809 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 DEPDC1BQ8WUY9 529 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 CPA5Q8WXQ8 436 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 ARHGEF26Q96DR7 871 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 CHFRQ96EP1 664 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 MSANTD3Q96H12 275 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 CORO1BQ9BR76 489 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 TRIM62Q9BVG3 475 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 ANKZF1Q9H8Y5 726 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 PRDM16Q9HAZ2 1276 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 FBRSL1Q9HCM7 1045 aaKnown RBP8.72□□□□□ -1.01
CHD4-208ENST00000540960 OSGEPQ9NPF4 335 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.72□□□□□ -1.015e-7■■■■■ 41.5
CHD4-208ENST00000540960 FAM114A2Q9NRY5 505 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 KANSL3Q9P2N6 904 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.72□□□□□ -1.01
CHD4-208ENST00000540960 EBF1Q9UH73 591 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 TMEM59LQ9UK28 342 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 APOBEC2Q9Y235 224 aaKnown RBP8.72□□□□□ -1.01
CHD4-208ENST00000540960 EFR3BQ9Y2G0 817 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 IPPQ9Y573 584 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 V9GYY5 206 aaPredicted RBP8.72□□□□□ -1.01
CHD4-208ENST00000540960 KIAA1549LQ6ZVL6 1849 aa8.72□□□□□ -1.01
CHD4-208ENST00000540960 TMEM191CA6NGB0 347 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 ZNF185O15231 689 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 CHADO15335 359 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 DDX3YO15523 660 aaKnown RBP8.71□□□□□ -1.02
CHD4-208ENST00000540960 CBFA2T3O75081 653 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 RNF40O75150 1001 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 TJP3O95049 919 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 GAS8O95995 478 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 EGFP01133 1207 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 FGGP02679 453 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 THP07101 528 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 KRT3P12035 628 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 MYF5P13349 255 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 PTPN2P17706 415 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 RRM1P23921 792 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 PCSK1P29120 753 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 CXCR5P32302 372 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 GNL1P36915 607 aaPredicted RBP8.71□□□□□ -1.02
CHD4-208ENST00000540960 IL12RB1P42701 662 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 GABRB2P47870 512 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 ATXN3P54252 364 aaPredicted RBP8.71□□□□□ -1.02
CHD4-208ENST00000540960 DRG2P55039 364 aaKnown RBP8.71□□□□□ -1.02
CHD4-208ENST00000540960 MAPRE1Q15691 268 aaKnown RBP8.71□□□□□ -1.02
CHD4-208ENST00000540960 ALS2CLQ60I27 953 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 C1orf228Q6PIY5 440 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 MMS22LQ6ZRQ5 1243 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 CDR2LQ86X02 465 aaPredicted RBP8.71□□□□□ -1.02
CHD4-208ENST00000540960 METTL23Q86XA0 190 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 SYT12Q8IV01 421 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 GPR65Q8IYL9 337 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 KATNAL2Q8IYT4 538 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 HS6ST3Q8IZP7 471 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 KRT222Q8N1A0 295 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 TTC13Q8NBP0 860 aa8.71□□□□□ -1.02
CHD4-208ENST00000540960 SLC4A11Q8NBS3 891 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms