RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	TOE1	Q96GM8	510 aa	Known RBP	13.61	□□□□□ -0.23
SEMA4D-223	ENST00000540475	HSPA12B	Q96MM6	686 aa		13.61	□□□□□ -0.23
SEMA4D-223	ENST00000540475	PRICKLE1	Q96MT3	831 aa	Predicted RBP	13.61	□□□□□ -0.23
SEMA4D-223	ENST00000540475	NUP58	Q9BVL2	599 aa		13.61	□□□□□ -0.23
SEMA4D-223	ENST00000540475	PCED1A	Q9H1Q7	454 aa		13.61	□□□□□ -0.23
SEMA4D-223	ENST00000540475	CLSTN2	Q9H4D0	955 aa		13.61	□□□□□ -0.23
SEMA4D-223	ENST00000540475	POPDC2	Q9HBU9	364 aa		13.61	□□□□□ -0.23
SEMA4D-223	ENST00000540475	DNAAF2	Q9NVR5	837 aa	Known RBP	13.61	□□□□□ -0.23
SEMA4D-223	ENST00000540475	ASNSD1	Q9NWL6	643 aa		13.61	□□□□□ -0.23
SEMA4D-223	ENST00000540475	PLA2G4C	Q9UP65	541 aa		13.61	□□□□□ -0.23
SEMA4D-223	ENST00000540475	ATXN2	Q99700	1313 aa	Known RBP	13.61	□□□□□ -0.23
SEMA4D-223	ENST00000540475	METTL12	A8MUP2	240 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	KCNU1	A8MYU2	1149 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475		E5RJQ4	531 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	GIPC1	O14908	333 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	THAP12	O43422	761 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	TBL1X	O60907	577 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	GJB3	O75712	270 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	ATP5B	P06576	529 aa	Known RBP	13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	EPHX1	P07099	455 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	ERCC5	P28715	1186 aa	Predicted RBP	13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	CD70	P32970	193 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	ZBTB16	Q05516	673 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	GFPT1	Q06210	699 aa	Predicted RBP	13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	MAN2A1	Q16706	1144 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	WDR45B	Q5MNZ6	344 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	KIAA1324	Q6UXG2	1013 aa	Known RBP	13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	TAC4	Q86UU9	113 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	HJURP	Q8NCD3	748 aa	Predicted RBP	13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	SLC2A13	Q96QE2	648 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	ST7	Q9NRC1	585 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	SUSD2	Q9UGT4	822 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	SUN2	Q9UH99	717 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	ANGPTL2	Q9UKU9	493 aa		13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	INTS6	Q9UL03	887 aa	Known RBP	13.6	□□□□□ -0.23
SEMA4D-223	ENST00000540475	ZFHX4	Q86UP3	3567 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	CEP295	Q9C0D2	2601 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	C10orf142	B7Z368	130 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	TRUB2	O95900	331 aa	Known RBP	13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	SYP	P08247	313 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	HLA-E	P13747	358 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	POLR2E	P19388	210 aa	Known RBP	13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	CLCN1	P35523	988 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	NOVA1	P51513	510 aa	Known RBP	13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	APBA1	Q02410	837 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	ARID5A	Q03989	594 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	SLC14A1	Q13336	389 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	ARHGAP44	Q17R89	818 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	DCAF6	Q58WW2	860 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	MIIP	Q5JXC2	388 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	FAM71A	Q8IYT1	594 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	CYB5D2	Q8WUJ1	264 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	FAM149B1	Q96BN6	582 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	ERLEC1	Q96DZ1	483 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	BTN2A3P	Q96KV6	586 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	MRGPRX3	Q96LB0	322 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	PRMT1	Q99873	361 aa	Known RBP	13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	ZDHHC5	Q9C0B5	715 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	NUCKS1	Q9H1E3	243 aa	Known RBP	13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	PRSS16	Q9NQE7	514 aa		13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	AJAP1	Q9UKB5	411 aa	Predicted RBP	13.59	□□□□□ -0.23
SEMA4D-223	ENST00000540475	USP24	Q9UPU5	2620 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	FOXN3	O00409	490 aa	Predicted RBP	13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	CAPN9	O14815	690 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	LUC7L3	O95232	432 aa	Known RBP	13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	ASL	P04424	464 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	CFI	P05156	583 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	GNS	P15586	552 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	RPS14	P62263	151 aa	Known RBP	13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	RPS24	P62847	133 aa	Known RBP	13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	PTK2	Q05397	1052 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	KCNMA1	Q12791	1236 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	TAF5	Q15542	800 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	DPCR1	Q3MIW9	517 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	VWA3B	Q502W6	1294 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	FNDC3B	Q53EP0	1204 aa	Known RBP	13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	FSCB	Q5H9T9	825 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	EFHC1	Q5JVL4	640 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	MFN1	Q8IWA4	741 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	FAM114A1	Q8IWE2	563 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	ZNF397	Q8NF99	534 aa	Predicted RBP	13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	ADAM32	Q8TC27	787 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	PPP1R13B	Q96KQ4	1090 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	CPXM1	Q96SM3	734 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	GPR174	Q9BXC1	333 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	RSPH9	Q9H1X1	276 aa	Predicted RBP	13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	NDST4	Q9H3R1	872 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	OSGEP	Q9NPF4	335 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	FSCN3	Q9NQT6	498 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	TJP2	Q9UDY2	1190 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	XPO7	Q9UIA9	1087 aa	Known RBP	13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	CACNA1B	Q00975	2339 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	ITIH6	Q6UXX5	1313 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	DOCK4	Q8N1I0	1966 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	AKAP13	Q12802	2813 aa		13.58	□□□□□ -0.24
SEMA4D-223	ENST00000540475	TMEM131	Q92545	1883 aa		13.57	□□□□□ -0.24
SEMA4D-223	ENST00000540475		A0A1B0GTW7	788 aa		13.57	□□□□□ -0.24
SEMA4D-223	ENST00000540475	TYW5	A2RUC4	315 aa	Known RBP	13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms