RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 USP30Q70CQ3 517 aa12.49□□□□□ -0.41
CBX3P4-202ENST00000540428 KDM1BQ8NB78 822 aa12.49□□□□□ -0.41
CBX3P4-202ENST00000540428 SLC35F5Q8WV83 523 aa12.49□□□□□ -0.41
CBX3P4-202ENST00000540428 IGSF8Q969P0 613 aa12.49□□□□□ -0.41
CBX3P4-202ENST00000540428 BIRC7Q96CA5 298 aa12.49□□□□□ -0.41
CBX3P4-202ENST00000540428 HSFY1Q96LI6 401 aa12.49□□□□□ -0.41
CBX3P4-202ENST00000540428 DDX50Q9BQ39 737 aaKnown RBP12.49□□□□□ -0.41
CBX3P4-202ENST00000540428 METTL14Q9HCE5 456 aaKnown RBP12.49□□□□□ -0.41
CBX3P4-202ENST00000540428 TM9SF3Q9HD45 589 aa12.49□□□□□ -0.41
CBX3P4-202ENST00000540428 DKK4Q9UBT3 224 aa12.49□□□□□ -0.41
CBX3P4-202ENST00000540428 ANKRD6Q9Y2G4 727 aa12.49□□□□□ -0.41
CBX3P4-202ENST00000540428 GPSM3Q9Y4H4 160 aa12.49□□□□□ -0.41
CBX3P4-202ENST00000540428 TYW5A2RUC4 315 aaKnown RBP12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 PAPSS1O43252 624 aaPredicted RBP12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 PCDHGA12O60330 932 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 DFNA5O60443 496 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 ACSL4O60488 711 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 TBL1XO60907 577 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 LTFP02788 710 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 ASLP04424 464 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 HOXB3P14651 431 aaPredicted RBP12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 GRK6P43250 576 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 CCT8P50990 548 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 SGSHP51688 502 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 SFSWAPQ12872 951 aaKnown RBP12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 NNTQ13423 1086 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 PNOCQ13519 176 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 COL9A2Q14055 689 aaPredicted RBP12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 ARID5BQ14865 1188 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 CNGA2Q16280 664 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 FAM133BQ5BKY9 247 aaKnown RBP12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 ANKRD40Q6AI12 368 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 PMF1Q6P1K2 205 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 GALNT15Q8N3T1 639 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 ZNF366Q8N895 744 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 ENGASEQ8NFI3 743 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 FIBINQ8TAL6 211 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 SPATA20Q8TB22 786 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 TTC17Q96AE7 1141 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 LMLNQ96KR4 655 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 RSPH9Q9H1X1 276 aaPredicted RBP12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 NCKAP1Q9Y2A7 1128 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 SNX11Q9Y5W9 270 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 SLCO1B1Q9Y6L6 691 aa12.48□□□□□ -0.41
CBX3P4-202ENST00000540428 ZFYVE26Q68DK2 2539 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 TNFSF14O43557 240 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 GABBR2O75899 941 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 FBXO21O94952 628 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 FSBPO95073 299 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 SMC2O95347 1197 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 ATXN1LP0C7T5 689 aaKnown RBP12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 SLC6A4P31645 630 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 CD70P32970 193 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 FMO5P49326 533 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 PMS1P54277 932 aaKnown RBP12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 TBX4P57082 545 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 ST8SIA6P61647 398 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 RACK1P63244 317 aaKnown RBP12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 LRMPQ12912 555 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 INAVAQ3KP66 663 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 KIAA0895LQ68EN5 471 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 TMEM270Q6UE05 265 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 MFN1Q8IWA4 741 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 FMR1NBQ8N0W7 255 aaPredicted RBP12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 HJURPQ8NCD3 748 aaPredicted RBP12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 WFDC5Q8TCV5 224 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 TFAP2BQ92481 460 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 MYO19Q96H55 970 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 SERPINB11Q96P15 392 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 NT5C1BQ96P26 610 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 ORAI3Q9BRQ5 295 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 PABPC3Q9H361 631 aaKnown RBP12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 PCDHB4Q9Y5E5 795 aa12.47□□□□□ -0.41
CBX3P4-202ENST00000540428 WDFY3Q8IZQ1 3526 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 DMXL2Q8TDJ6 3036 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 MUC22E2RYF6 1773 aaPredicted RBP12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 ATRXP46100 2492 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 GOLGA6L7A0A1B0GV03 622 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 A0A1W2PPC4 97 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 M0QYV0 167 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 VILLO15195 856 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 P4HA2O15460 535 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 SART1O43290 800 aaKnown RBP12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 RNASEH1O60930 286 aaKnown RBP12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 IGHV4-34P06331 123 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 PPP1R2P41236 205 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 CTSKP43235 329 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 RGS7P49802 495 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 CETN1Q12798 172 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 ACAP1Q15027 740 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 HNRNPA1L2Q32P51 320 aaKnown RBP12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 RFWD3Q6PCD5 774 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 BEND5Q7L4P6 421 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 ADAT2Q7Z6V5 191 aaKnown RBP12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 CCDC117Q8IWD4 279 aaPredicted RBP12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 FCRL2Q96LA5 508 aaPredicted RBP12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 PRICKLE1Q96MT3 831 aaPredicted RBP12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 CEP63Q96MT8 703 aa12.46□□□□□ -0.41
CBX3P4-202ENST00000540428 TPX2Q9ULW0 747 aaKnown RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms