RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 SLC10A2Q12908 348 aaPredicted RBP17.42■□□□□ 0.38
COPS3-212ENST00000539941 MTA1Q13330 715 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 PDK1Q15118 436 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 LRIT3Q3SXY7 679 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 ACBD5Q5T8D3 534 aaPredicted RBP17.42■□□□□ 0.38
COPS3-212ENST00000539941 FAM72AQ5TYM5 149 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 FAM72DQ6L9T8 149 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 PRUNE1Q86TP1 453 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 HOOK3Q86VS8 718 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 FAM72BQ86X60 149 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 CNPY4Q8N129 248 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 SP7Q8TDD2 431 aaPredicted RBP17.42■□□□□ 0.38
COPS3-212ENST00000539941 SLC39A13Q96H72 371 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 RAD9AQ99638 391 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 LBHD1Q9BQE6 289 aaPredicted RBP17.42■□□□□ 0.38
COPS3-212ENST00000539941 RXFP1Q9HBX9 757 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 ETNK2Q9NVF9 386 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 PAK5Q9P286 719 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 ATP8A1Q9Y2Q0 1164 aa17.42■□□□□ 0.38
COPS3-212ENST00000539941 PPP1R12AO14974 1030 aaPredicted RBP17.41■□□□□ 0.38
COPS3-212ENST00000539941 NCAM2O15394 837 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 OPA1O60313 960 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 LILRB3O75022 631 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 SEC24AO95486 1093 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 ERCC2P18074 760 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 SERPINB6P35237 376 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 KPNA1P52294 538 aaPredicted RBP17.41■□□□□ 0.38
COPS3-212ENST00000539941 TRIP4Q15650 581 aaPredicted RBP17.41■□□□□ 0.38
COPS3-212ENST00000539941 UAP1Q16222 522 aaPredicted RBP17.41■□□□□ 0.38
COPS3-212ENST00000539941 RNASEH2BQ5TBB1 312 aaKnown RBP17.41■□□□□ 0.38
COPS3-212ENST00000539941 SNX30Q5VWJ9 437 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 TRMT10CQ7L0Y3 403 aaKnown RBP17.41■□□□□ 0.38
COPS3-212ENST00000539941 HERC6Q8IVU3 1022 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 ZCCHC9Q8N567 271 aaKnown RBP17.41■□□□□ 0.38
COPS3-212ENST00000539941 GIMAP7Q8NHV1 300 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 GIPC2Q8TF65 315 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 FERMT1Q9BQL6 677 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 PHACTR1Q9C0D0 580 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 BRD8Q9H0E9 1235 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 ZBP1Q9H171 429 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 MTIF3Q9H2K0 278 aaKnown RBP17.41■□□□□ 0.38
COPS3-212ENST00000539941 PABPC3Q9H361 631 aaKnown RBP17.41■□□□□ 0.38
COPS3-212ENST00000539941 SLC4A7Q9Y6M7 1214 aa17.41■□□□□ 0.38
COPS3-212ENST00000539941 AGPSO00116 658 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 KCNN4O15554 427 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 MSI1O43347 362 aaKnown RBP17.4■□□□□ 0.38
COPS3-212ENST00000539941 MFSD11O43934 449 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 PAGE1O75459 146 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 LRIG2O94898 1065 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 CTSAP10619 480 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 RBL1P28749 1068 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 HOXC13P31276 330 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 HNRNPH1P31943 449 aaKnown RBP17.4■□□□□ 0.38
COPS3-212ENST00000539941 ALDH1A3P47895 512 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 TBX4P57082 545 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 RASIP1Q5U651 963 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 RELL1Q8IUW5 271 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 PPIL6Q8IXY8 311 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 TCEAL8Q8IYN2 117 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 TFB1MQ8WVM0 346 aaKnown RBP17.4■□□□□ 0.38
COPS3-212ENST00000539941 UBLCP1Q8WVY7 318 aaPredicted RBP17.4■□□□□ 0.38
COPS3-212ENST00000539941 TRMT2BQ96GJ1 504 aaKnown RBP17.4■□□□□ 0.38
COPS3-212ENST00000539941 C1orf74Q96LT6 269 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 MYRFLQ96LU7 910 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 ZIM3Q96PE6 472 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 C10orf88Q9H8K7 445 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 CYP4F11Q9HBI6 524 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 CXXC1Q9P0U4 656 aaPredicted RBP17.4■□□□□ 0.38
COPS3-212ENST00000539941 FARP1Q9Y4F1 1045 aaPredicted RBP17.4■□□□□ 0.38
COPS3-212ENST00000539941 YIPF1Q9Y548 306 aa17.4■□□□□ 0.38
COPS3-212ENST00000539941 FGF10O15520 208 aaPredicted RBP17.39■□□□□ 0.37
COPS3-212ENST00000539941 APOEP02649 317 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 ELF1P32519 619 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 GGCXP38435 758 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 RING1Q06587 406 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 EFEMP1Q12805 493 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 VEPH1Q14D04 833 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 C10orf120Q5SQS8 335 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 MANEALQ5VSG8 457 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 FCRL2Q96LA5 508 aaPredicted RBP17.39■□□□□ 0.37
COPS3-212ENST00000539941 SH3GL2Q99962 352 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 MARCH2Q9P0N8 246 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 SLC12A6Q9UHW9 1150 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 NUDT5Q9UKK9 219 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 PLAAQ9Y263 795 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 C5orf60A6NFR6 353 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 GCATO75600 419 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 EPHB2P29323 1055 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 PPP3CCP48454 512 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 EIF3BP55884 814 aaKnown RBP17.39■□□□□ 0.37
COPS3-212ENST00000539941 PRKD1Q15139 912 aaPredicted RBP17.39■□□□□ 0.37
COPS3-212ENST00000539941 HEATR6Q6AI08 1181 aaKnown RBP17.39■□□□□ 0.37
COPS3-212ENST00000539941 KLHDC10Q6PID8 442 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 FOXR1Q6PIV2 292 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 B4GALNT4Q76KP1 1039 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 ATP6V0D2Q8N8Y2 350 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 CATSPERBQ9H7T0 1116 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 MAGED2Q9UNF1 606 aaPredicted RBP17.39■□□□□ 0.37
COPS3-212ENST00000539941 LZTS1Q9Y250 596 aa17.39■□□□□ 0.37
COPS3-212ENST00000539941 RWDD3Q9Y3V2 267 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms