RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 TBC1D3BA6NDS4 549 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 HNRNPLP14866 589 aaKnown RBP eCLIP16.3■□□□□ 0.2
RPAIN-206ENST00000539417 HLA-FP30511 346 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 TIE1P35590 1138 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 NUMBP49757 651 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 DMWDQ09019 674 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 AUHQ13825 339 aaKnown RBP16.3■□□□□ 0.2
RPAIN-206ENST00000539417 FSCBQ5H9T9 825 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 C10orf76Q5T2E6 689 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 FBXL22Q6P050 247 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 ALKBH5Q6P6C2 394 aaKnown RBP16.3■□□□□ 0.2
RPAIN-206ENST00000539417 ZNF683Q8IZ20 524 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 CCDC33Q8N5R6 958 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 CCDC185Q8N715 623 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 SORCS1Q8WY21 1168 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 LMLNQ96KR4 655 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 ACOX2Q99424 681 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 PACSIN1Q9BY11 444 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 SIK2Q9H0K1 926 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 VANGL2Q9ULK5 521 aa16.3■□□□□ 0.2
RPAIN-206ENST00000539417 TMEM191CA6NGB0 347 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.29■□□□□ 0.2
RPAIN-206ENST00000539417 F9P00740 461 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 TDGF1P13385 188 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 CD70P32970 193 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 MAGEA9P43362 315 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 ZNF143P52747 638 aaPredicted RBP16.29■□□□□ 0.2
RPAIN-206ENST00000539417 MAPK8IP2Q13387 824 aaPredicted RBP16.29■□□□□ 0.2
RPAIN-206ENST00000539417 BRMS1LQ5PSV4 323 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 CCDC122Q5T0U0 273 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 EGFLAMQ63HQ2 1017 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 SYNPOQ8N3V7 929 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 SPEM1Q8N4L4 309 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 ALLCQ8N6M5 410 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 ARFGAP1Q8N6T3 406 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 ERLEC1Q96DZ1 483 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 PRMT8Q9NR22 394 aaPredicted RBP16.29■□□□□ 0.2
RPAIN-206ENST00000539417 SPTLC3Q9NUV7 552 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 PARVAQ9NVD7 372 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 FAM86C1Q9NVL1 165 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 SLC27A6Q9Y2P4 619 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 MUC6Q6W4X9 2439 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 USP34Q70CQ2 3546 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 CHURC1-FNTBB4DL54 471 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 K7ESF4 209 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 LAMTOR5O43504 91 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 ADAM23O75077 832 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 CNTN5O94779 1100 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 TPM1P09493 284 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 SLC2A3P11169 496 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 WASP42768 502 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 TNFRSF4P43489 277 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 GALCP54803 685 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 CSTF1Q05048 431 aaKnown RBP16.29■□□□□ 0.2
RPAIN-206ENST00000539417 FBXO43Q4G163 708 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 DAB2IPQ5VWQ8 1189 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 DCUN1D2Q6PH85 259 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 STRADAQ7RTN6 431 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 CARNMT1Q8N4J0 409 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 IL17RCQ8NAC3 791 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 HJURPQ8NCD3 748 aaPredicted RBP16.29■□□□□ 0.2
RPAIN-206ENST00000539417 OR52K2Q8NGK3 314 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 BTBD6Q96KE9 485 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 NHEJ1Q9H9Q4 299 aaPredicted RBP16.29■□□□□ 0.2
RPAIN-206ENST00000539417 ABCB8Q9NUT2 735 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 SLC12A6Q9UHW9 1150 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 HCN4Q9Y3Q4 1203 aa16.29■□□□□ 0.2
RPAIN-206ENST00000539417 SSU72P8A0A1W2PR75 194 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 WASH3PC4AMC7 463 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 F5H5T6 163 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 FAM72CH0Y354 149 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 SGK1O00141 431 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 KLF8O95600 359 aaPredicted RBP16.28■□□□□ 0.2
RPAIN-206ENST00000539417 SP9P0CG40 484 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 ADRA1BP35368 520 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 NUBP1P53384 320 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 LMAN2Q12907 356 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 SLC18A3Q16572 532 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 ALFQ53S48 1182 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 MPP7Q5T2T1 576 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 FAM72AQ5TYM5 149 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 FAM72DQ6L9T8 149 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 PPP1R2P3Q6NXS1 205 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 TMEM92Q6UXU6 159 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 SND1Q7KZF4 910 aaKnown RBP eCLIP16.28■□□□□ 0.2
RPAIN-206ENST00000539417 KIAA0907Q7Z7F0 614 aaPredicted RBP16.28■□□□□ 0.2
RPAIN-206ENST00000539417 FAM72BQ86X60 149 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 CNGA4Q8IV77 575 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 EXOC4Q96A65 974 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 PHOX2BQ99453 314 aa16.28■□□□□ 0.2
RPAIN-206ENST00000539417 DDX50Q9BQ39 737 aaKnown RBP16.28■□□□□ 0.2
RPAIN-206ENST00000539417 INTS6Q9UL03 887 aaKnown RBP16.28■□□□□ 0.2
RPAIN-206ENST00000539417 LUC7L3O95232 432 aaKnown RBP16.27■□□□□ 0.19
RPAIN-206ENST00000539417 CXCL12P48061 93 aa16.27■□□□□ 0.19
RPAIN-206ENST00000539417 PXNP49023 591 aaPredicted RBP16.27■□□□□ 0.19
RPAIN-206ENST00000539417 MAMSTRQ6ZN01 415 aa16.27■□□□□ 0.19
RPAIN-206ENST00000539417 ADIPOR2Q86V24 386 aa16.27■□□□□ 0.19
RPAIN-206ENST00000539417 VPS36Q86VN1 386 aa16.27■□□□□ 0.19
RPAIN-206ENST00000539417 CPNE8Q86YQ8 564 aa16.27■□□□□ 0.19
RPAIN-206ENST00000539417 PYROXD2Q8N2H3 581 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms