RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 LETM1O95202 739 aaPredicted RBP15.3■□□□□ 0.04
VPS28-215ENST00000531924 MOCS3O95396 460 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 CER1O95813 267 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 MOCS2O96007 188 aaPredicted RBP15.3■□□□□ 0.04
VPS28-215ENST00000531924 IGLV3-19P01714 112 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 IGLV3-27P01718 113 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 APOEP02649 317 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 CD59P13987 128 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 CD70P32970 193 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 USP8P40818 1118 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 SGSHP51688 502 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 ZBTB16Q05516 673 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 SFSWAPQ12872 951 aaKnown RBP15.3■□□□□ 0.04
VPS28-215ENST00000531924 TEAD4Q15561 434 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 TRIP6Q15654 476 aaKnown RBP15.3■□□□□ 0.04
VPS28-215ENST00000531924 ZNF423Q2M1K9 1284 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 NAXDQ8IW45 347 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 TRIM59Q8IWR1 403 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 LMO3Q8TAP4 145 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 DQX1Q8TE96 717 aaKnown RBP15.3■□□□□ 0.04
VPS28-215ENST00000531924 SETD7Q8WTS6 366 aaKnown RBP15.3■□□□□ 0.04
VPS28-215ENST00000531924 ZSWIM1Q9BR11 485 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 BTBD1Q9H0C5 482 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 TMEM245Q9H330 911 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 NCKAP1Q9Y2A7 1128 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 TLR6Q9Y2C9 796 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 NEUROG3Q9Y4Z2 214 aa15.3■□□□□ 0.04
VPS28-215ENST00000531924 TNRC6BQ9UPQ9 1833 aaKnown RBP15.29■□□□□ 0.04
VPS28-215ENST00000531924 THAP12O43422 761 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 SLC6A4P31645 630 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 MATKP42679 507 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 AFF3P51826 1226 aaKnown RBP15.29■□□□□ 0.04
VPS28-215ENST00000531924 FAM133BQ5BKY9 247 aaKnown RBP15.29■□□□□ 0.04
VPS28-215ENST00000531924 RNF219Q5W0B1 726 aaPredicted RBP15.29■□□□□ 0.04
VPS28-215ENST00000531924 ZNF776Q68DI1 518 aaPredicted RBP15.29■□□□□ 0.04
VPS28-215ENST00000531924 DENND1BQ6P3S1 775 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 ENOSF1Q7L5Y1 443 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 ADAM32Q8TC27 787 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 FAM81BQ96LP2 452 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 KREMEN1Q96MU8 473 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 CAMK1GQ96NX5 476 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 MED15Q96RN5 788 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 GAREM1Q9H706 876 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 PRSS16Q9NQE7 514 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 TJP2Q9UDY2 1190 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 SLC12A6Q9UHW9 1150 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 WASF3Q9UPY6 502 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 NAALADL1Q9UQQ1 740 aa15.29■□□□□ 0.04
VPS28-215ENST00000531924 FSBPO95073 299 aa15.28■□□□□ 0.04
VPS28-215ENST00000531924 SEMA4FO95754 770 aa15.28■□□□□ 0.04
VPS28-215ENST00000531924 ASLP04424 464 aa15.28■□□□□ 0.04
VPS28-215ENST00000531924 BMP6P22004 513 aa15.28■□□□□ 0.04
VPS28-215ENST00000531924 GNA15P30679 374 aa15.28■□□□□ 0.04
VPS28-215ENST00000531924 GPD2P43304 727 aa15.28■□□□□ 0.04
VPS28-215ENST00000531924 RPS14P62263 151 aaKnown RBP15.28■□□□□ 0.04
VPS28-215ENST00000531924 NNTQ13423 1086 aa15.28■□□□□ 0.04
VPS28-215ENST00000531924 PTPRNQ16849 979 aa15.28■□□□□ 0.04
VPS28-215ENST00000531924 LRSAM1Q6UWE0 723 aa15.28■□□□□ 0.04
VPS28-215ENST00000531924 KIAA0907Q7Z7F0 614 aaPredicted RBP15.28■□□□□ 0.04
VPS28-215ENST00000531924 CFAP52Q8N1V2 620 aa15.28■□□□□ 0.04
VPS28-215ENST00000531924 FIBINQ8TAL6 211 aa15.28■□□□□ 0.04
VPS28-215ENST00000531924 STK32AQ8WU08 396 aa15.28■□□□□ 0.04
VPS28-215ENST00000531924 FCRL2Q96LA5 508 aaPredicted RBP15.28■□□□□ 0.04
VPS28-215ENST00000531924 C6orf106Q9H6K1 298 aaPredicted RBP15.28■□□□□ 0.04
VPS28-215ENST00000531924 ZMIZ1Q9ULJ6 1067 aa15.28■□□□□ 0.04
VPS28-215ENST00000531924 USP24Q9UPU5 2620 aa15.28■□□□□ 0.04
VPS28-215ENST00000531924 FRYQ5TBA9 3013 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 GADD45BO75293 160 aaPredicted RBP15.27■□□□□ 0.04
VPS28-215ENST00000531924 ACSL1P33121 698 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 CSKP41240 450 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 MARSP56192 900 aaKnown RBP15.27■□□□□ 0.04
VPS28-215ENST00000531924 RPS24P62847 133 aaKnown RBP15.27■□□□□ 0.04
VPS28-215ENST00000531924 YWHAZP63104 245 aaKnown RBP15.27■□□□□ 0.04
VPS28-215ENST00000531924 FAM193AP78312 1265 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 SUZ12Q15022 739 aaKnown RBP15.27■□□□□ 0.04
VPS28-215ENST00000531924 HLA-BQ31612 363 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 MS4A13Q5J8X5 152 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 NADSYN1Q6IA69 706 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 ADAT2Q7Z6V5 191 aaKnown RBP15.27■□□□□ 0.04
VPS28-215ENST00000531924 TAC4Q86UU9 113 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 CHSY1Q86X52 802 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 LGI2Q8N0V4 545 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 CHCHD4Q8N4Q1 142 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 KDF1Q8NAX2 398 aaPredicted RBP15.27■□□□□ 0.04
VPS28-215ENST00000531924 WFDC5Q8TCV5 224 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 ZNF606Q8WXB4 792 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 RNF34Q969K3 372 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 CRACR2AQ9BSW2 395 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 NUCKS1Q9H1E3 243 aaKnown RBP15.27■□□□□ 0.04
VPS28-215ENST00000531924 FAM204AQ9H8W3 233 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 POPDC2Q9HBU9 364 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 SGK2Q9HBY8 427 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 KIAA1522Q9P206 1035 aaPredicted RBP15.27■□□□□ 0.04
VPS28-215ENST00000531924 KLK13Q9UKR3 277 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 SCML1Q9UN30 329 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 CNTN6Q9UQ52 1028 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 APOBEC2Q9Y235 224 aaKnown RBP15.27■□□□□ 0.04
VPS28-215ENST00000531924 MSRB2Q9Y3D2 182 aa15.27■□□□□ 0.04
VPS28-215ENST00000531924 ASCC3Q8N3C0 2202 aaKnown RBP15.27■□□□□ 0.03
VPS28-215ENST00000531924 PI4KAP42356 2102 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms