RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 DPP7Q9UHL4 492 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 RAD54BQ9Y620 910 aa21.69■■□□□ 1.06
VPS28-208ENST00000527797 BCLAF3A2AJT9 711 aaKnown RBP21.68■■□□□ 1.06
VPS28-208ENST00000527797 E9PAM4 449 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 FGF10O15520 208 aaPredicted RBP21.68■■□□□ 1.06
VPS28-208ENST00000527797 MFSD11O43934 449 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 MAP3K6O95382 1288 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 IFNB1P01574 187 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 EPCAMP16422 314 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 CDC25CP30307 473 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 HOXC13P31276 330 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 HARS2P49590 506 aaKnown RBP21.68■■□□□ 1.06
VPS28-208ENST00000527797 BEND6Q5SZJ8 279 aaPredicted RBP21.68■■□□□ 1.06
VPS28-208ENST00000527797 LRRC31Q6UY01 552 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 TMC8Q8IU68 726 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 AENQ8WTP8 325 aaKnown RBP21.68■■□□□ 1.06
VPS28-208ENST00000527797 ARNTL2Q8WYA1 636 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 MRPS31Q92665 395 aaKnown RBP21.68■■□□□ 1.06
VPS28-208ENST00000527797 GCNAQ96QF7 691 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 CORO1BQ9BR76 489 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 RNF38Q9H0F5 515 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 PCDH9Q9HC56 1237 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 TRPC7Q9HCX4 862 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 ASAH2Q9NR71 780 aa21.68■■□□□ 1.06
VPS28-208ENST00000527797 HACD1B0YJ81 288 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 MBL2P11226 248 aaPredicted RBP21.67■■□□□ 1.06
VPS28-208ENST00000527797 ITIH2P19823 946 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 HOXA9P31269 272 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 SERPINB6P35237 376 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 KCNQ1P51787 676 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 CALCOCO2Q13137 446 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 AUHQ13825 339 aaKnown RBP21.67■■□□□ 1.06
VPS28-208ENST00000527797 PDK1Q15118 436 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 B4GALNT4Q76KP1 1039 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 C14orf80Q86SX3 495 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 FAM71DQ8N9W8 422 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 BBOF1Q8ND07 529 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 SNF8Q96H20 258 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 OLFM3Q96PB7 478 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 KLF16Q9BXK1 252 aaPredicted RBP21.67■■□□□ 1.06
VPS28-208ENST00000527797 GRHL1Q9NZI5 618 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 WHRNQ9P202 907 aa21.67■■□□□ 1.06
VPS28-208ENST00000527797 PER2O15055 1255 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 SEC31AO94979 1220 aaKnown RBP21.66■■□□□ 1.06
VPS28-208ENST00000527797 HNRNPA1P09651 372 aaKnown RBP eCLIP21.66■■□□□ 1.06
VPS28-208ENST00000527797 ZSCAN5DPP0CG00 497 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 MYL4P12829 197 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 ETS1P14921 441 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 ECHS1P30084 290 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 VPS41P49754 854 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 GDF10P55107 478 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 SLC45A4Q5BKX6 768 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 TXNDC8Q6A555 127 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 EMBQ6PCB8 327 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 ELMSAN1Q6PJG2 1045 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 GAREM2Q75VX8 874 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 PRUNE1Q86TP1 453 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 GLIS1Q8NBF1 620 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 TFB1MQ8WVM0 346 aaKnown RBP21.66■■□□□ 1.06
VPS28-208ENST00000527797 FAM129AQ9BZQ8 928 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 ATXN3LQ9H3M9 355 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 NEU3Q9UQ49 428 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 FGF19O95750 216 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 PTPN2P17706 415 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 HDCP19113 662 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 IVDP26440 423 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 RBL1P28749 1068 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 BMP8BP34820 402 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 SLC11A2P49281 568 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 PLTPP55058 493 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 RAP1GAP2Q684P5 730 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 RBM23Q86U06 439 aaKnown RBP21.66■■□□□ 1.06
VPS28-208ENST00000527797 QKIQ96PU8 341 aaKnown RBP eCLIP21.66■■□□□ 1.06
VPS28-208ENST00000527797 USP29Q9HBJ7 922 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 GKN1Q9NS71 199 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 PPARGC1AQ9UBK2 798 aaKnown RBP21.66■■□□□ 1.06
VPS28-208ENST00000527797 VANGL2Q9ULK5 521 aa21.66■■□□□ 1.06
VPS28-208ENST00000527797 CLUHO75153 1309 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 PPP1R12AO14974 1030 aaPredicted RBP21.65■■□□□ 1.06
VPS28-208ENST00000527797 NCAM2O15394 837 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 KCNN4O15554 427 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 ACSL4O60488 711 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 XYLBO75191 536 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 RFPL2O75678 378 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 STC2O76061 302 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 OLFM2O95897 454 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 CYP4F8P98187 520 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 ZNF683Q8IZ20 524 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 CCDC33Q8N5R6 958 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 LZTR1Q8N653 840 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 ARL14EPQ8N8R7 260 aaPredicted RBP21.65■■□□□ 1.06
VPS28-208ENST00000527797 ART4Q93070 314 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 AZIN2Q96A70 460 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 LRRC45Q96CN5 670 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 CYP2S1Q96SQ9 504 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 PRMT1Q99873 361 aaKnown RBP21.65■■□□□ 1.06
VPS28-208ENST00000527797 NEUROG2Q9H2A3 272 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 TLE6Q9H808 572 aa21.65■■□□□ 1.06
VPS28-208ENST00000527797 MX2P20592 715 aa21.64■■□□□ 1.05
VPS28-208ENST00000527797 ACTN2P35609 894 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms