RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 FAM90A9PA6NNJ1 464 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 FAM90A5PA8MXJ8 464 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 KIF28PB7ZC32 967 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 F8W810 466 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 M0QYT0 321 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 SOCS2O14508 198 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 EIF3JO75822 258 aaKnown RBP5.3□□□□□ -1.56
CD44-223ENST00000526553 LARGE1O95461 756 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 ITGA2BP08514 1039 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 CYP3A4P08684 503 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 FAM90A15PP0C7V4 464 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 FAM90A14PP0C7W9 464 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 SERPINF1P36955 418 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 CDK7P50613 346 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 SLC37A1P57057 533 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 RHBDL3P58872 404 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 TAS2R50P59544 299 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 SF3A3Q12874 501 aaKnown RBP eCLIP5.3□□□□□ -1.56
CD44-223ENST00000526553 OS9Q13438 667 aaPredicted RBP5.3□□□□□ -1.56
CD44-223ENST00000526553 BIRC2Q13490 618 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 TWIST1Q15672 202 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 TMEM88Q6PEY1 159 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 DHRS13Q6UX07 377 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 ZNF793Q6ZN11 406 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 MPLKIPQ8TAP9 179 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 ZFYVE19Q96K21 471 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 RMDN3Q96TC7 470 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 RTKNQ9BST9 563 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 TRMOQ9BU70 441 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 SCNM1Q9BWG6 230 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 CCDC134Q9H6E4 229 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 MOV10Q9HCE1 1003 aaKnown RBP5.3□□□□□ -1.56
CD44-223ENST00000526553 PAPOLBQ9NRJ5 636 aaKnown RBP5.3□□□□□ -1.56
CD44-223ENST00000526553 TAGLN3Q9UI15 199 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 HERC5Q9UII4 1024 aaKnown RBP5.3□□□□□ -1.56
CD44-223ENST00000526553 CNTN6Q9UQ52 1028 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 DAAM1Q9Y4D1 1078 aa5.3□□□□□ -1.56
CD44-223ENST00000526553 LY6G6EA0A0G2JKS1 128 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 SLC38A8A6NNN8 435 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 CNTN5O94779 1100 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 KAT7O95251 611 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 PRF1P14222 555 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 TGM2P21980 687 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 GRK5P34947 590 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 NR4A2P43354 598 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 FOXL2P58012 376 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 RBM6P78332 1123 aaKnown RBP5.29□□□□□ -1.56
CD44-223ENST00000526553 B4GALNT1Q00973 533 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 BTBD16Q32M84 506 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 ATPAF1Q5TC12 328 aaPredicted RBP5.29□□□□□ -1.56
CD44-223ENST00000526553 GGT6Q6P531 493 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 CERS3Q8IU89 383 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 ADGRF3Q8IZF5 1079 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 FAM47BQ8NA70 645 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 OR52N4Q8NGI2 321 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 POF1BQ8WVV4 589 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 HMCESQ96FZ2 354 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 ABHD14AQ9BUJ0 271 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 KRTAP17-1Q9BYP8 105 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 SFXN1Q9H9B4 322 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 TMEM45AQ9NWC5 275 aa5.29□□□□□ -1.56
CD44-223ENST00000526553 TRPC5Q9UL62 973 aaPredicted RBP5.29□□□□□ -1.56
CD44-223ENST00000526553 CYP3A7-CYP3A51PA0A087WV96 503 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 LOC102724159A0A0B4J2E5 919 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 MBD3L5A6NJ08 208 aaPredicted RBP5.28□□□□□ -1.56
CD44-223ENST00000526553 EFCAB8A8MWE9 144 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 F5H423 210 aaPredicted RBP5.28□□□□□ -1.56
CD44-223ENST00000526553 ACKR2O00590 384 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 CSTBP04080 98 aaKnown RBP5.28□□□□□ -1.56
CD44-223ENST00000526553 TMEM191BP0C7N4 346 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 CYP19A1P11511 503 aaPredicted RBP5.28□□□□□ -1.56
CD44-223ENST00000526553 CYP3A7P24462 503 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 FAM3BP58499 235 aaPredicted RBP5.28□□□□□ -1.56
CD44-223ENST00000526553 BLMHQ13867 455 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 KRT72Q14CN4 511 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 PWP2Q15269 919 aaKnown RBP5.28□□□□□ -1.56
CD44-223ENST00000526553 ZNF569Q5MCW4 686 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 LIPMQ5VYY2 423 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 NFRKBQ6P4R8 1299 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 RAB11FIP2Q7L804 512 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.28□□□□□ -1.56
CD44-223ENST00000526553 SMC5Q8IY18 1101 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 PAQR4Q8N4S7 273 aaPredicted RBP5.28□□□□□ -1.56
CD44-223ENST00000526553 ARFGAP1Q8N6T3 406 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 ATG16L2Q8NAA4 619 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 OR1N1Q8NGS0 311 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 RPS6KC1Q96S38 1066 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 TUBB6Q9BUF5 446 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 HTATIP2Q9BUP3 242 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 MECRQ9BV79 373 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 MLXIPQ9HAP2 919 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 HEY2Q9UBP5 337 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 RAB21Q9UL25 225 aa5.28□□□□□ -1.56
CD44-223ENST00000526553 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.28□□□□□ -1.56
CD44-223ENST00000526553 TTBK1Q5TCY1 1321 aaPredicted RBP5.27□□□□□ -1.57
CD44-223ENST00000526553 TLX3O43711 291 aaPredicted RBP5.27□□□□□ -1.57
CD44-223ENST00000526553 ACTL6BO94805 426 aa5.27□□□□□ -1.57
CD44-223ENST00000526553 FOXO1Q12778 655 aa5.27□□□□□ -1.57
CD44-223ENST00000526553 MTX1Q13505 466 aa5.27□□□□□ -1.57
CD44-223ENST00000526553 LIN54Q6MZP7 749 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms