RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CRADDP78560 199 aa21.83■■□□□ 1.08
VPS28-205ENST00000526204 IFRD2Q12894 506 aaPredicted RBP21.83■■□□□ 1.08
VPS28-205ENST00000526204 UBXN11Q5T124 520 aa21.83■■□□□ 1.08
VPS28-205ENST00000526204 OTUD1Q5VV17 481 aaPredicted RBP21.83■■□□□ 1.08
VPS28-205ENST00000526204 WDR75Q8IWA0 830 aaKnown RBP21.83■■□□□ 1.08
VPS28-205ENST00000526204 NME8Q8N427 588 aa21.83■■□□□ 1.08
VPS28-205ENST00000526204 MIEF2Q96C03 454 aa21.83■■□□□ 1.08
VPS28-205ENST00000526204 PRDM12Q9H4Q4 367 aa21.83■■□□□ 1.08
VPS28-205ENST00000526204 STN1Q9H668 368 aaKnown RBP21.83■■□□□ 1.08
VPS28-205ENST00000526204 GOLGA2P5Q9HBQ8 144 aa21.83■■□□□ 1.08
VPS28-205ENST00000526204 RAD54BQ9Y620 910 aa21.83■■□□□ 1.08
VPS28-205ENST00000526204 LIN7AO14910 233 aaPredicted RBP21.82■■□□□ 1.08
VPS28-205ENST00000526204 CREB3O43889 395 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 MAGEC1O60732 1142 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 PTPN1P18031 435 aaKnown RBP21.82■■□□□ 1.08
VPS28-205ENST00000526204 PSMB4P28070 264 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 PGM1P36871 562 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 DEUP1Q05D60 604 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 DPYSQ14117 519 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 MFSD10Q14728 455 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 INSCQ1MX18 579 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 RFX8Q6ZV50 586 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 UNC5BQ8IZJ1 945 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 TMEM40Q8WWA1 233 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 NDRG1Q92597 394 aaKnown RBP21.82■■□□□ 1.08
VPS28-205ENST00000526204 TXNDC16Q9P2K2 825 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 TAGLN3Q9UI15 199 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 B2RBV5 119 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 EEF2KO00418 725 aaKnown RBP21.82■■□□□ 1.08
VPS28-205ENST00000526204 SERPINA6P08185 405 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 KITP10721 976 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 LRPAP1P30533 357 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 RAP1GDS1P52306 607 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 ADAM17P78536 824 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 TSNAXIP1Q2TAA8 658 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 OSTM1Q86WC4 334 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 ZNF567Q8N184 647 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 PGBD4Q96DM1 585 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 C20orf27Q9GZN8 174 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 ZNF395Q9H8N7 513 aaPredicted RBP21.82■■□□□ 1.08
VPS28-205ENST00000526204 SEPT10Q9P0V9 454 aa21.82■■□□□ 1.08
VPS28-205ENST00000526204 F5H423 210 aaPredicted RBP21.81■■□□□ 1.08
VPS28-205ENST00000526204 TPP1O14773 563 aa21.81■■□□□ 1.08
VPS28-205ENST00000526204 FBXO21O94952 628 aa21.81■■□□□ 1.08
VPS28-205ENST00000526204 GSRP00390 522 aa21.81■■□□□ 1.08
VPS28-205ENST00000526204 ITGA2BP08514 1039 aa21.81■■□□□ 1.08
VPS28-205ENST00000526204 PDE1BQ01064 536 aa21.81■■□□□ 1.08
VPS28-205ENST00000526204 IRF5Q13568 498 aa21.81■■□□□ 1.08
VPS28-205ENST00000526204 PDE1CQ14123 709 aaPredicted RBP21.81■■□□□ 1.08
VPS28-205ENST00000526204 KPNB1Q14974 876 aaKnown RBP21.81■■□□□ 1.08
VPS28-205ENST00000526204 CCDC6Q16204 474 aa21.81■■□□□ 1.08
VPS28-205ENST00000526204 SPANXN3Q5MJ09 141 aa21.81■■□□□ 1.08
VPS28-205ENST00000526204 N4BP2L1Q5TBK1 243 aaPredicted RBP21.81■■□□□ 1.08
VPS28-205ENST00000526204 MBLAC2Q68D91 279 aa21.81■■□□□ 1.08
VPS28-205ENST00000526204 NPLOC4Q8TAT6 608 aa21.81■■□□□ 1.08
VPS28-205ENST00000526204 BRI3BPQ8WY22 251 aa21.81■■□□□ 1.08
VPS28-205ENST00000526204 RILPQ96NA2 401 aa21.81■■□□□ 1.08
VPS28-205ENST00000526204 ZFATQ9P243 1243 aa21.81■■□□□ 1.08
VPS28-205ENST00000526204 MARCOQ9UEW3 520 aaPredicted RBP21.81■■□□□ 1.08
VPS28-205ENST00000526204 IPPQ9Y573 584 aa21.81■■□□□ 1.08
VPS28-205ENST00000526204 NCAM2O15394 837 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 PLIN3O60664 434 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 GARSP41250 739 aaKnown RBP21.8■■□□□ 1.08
VPS28-205ENST00000526204 CRYBB1P53674 252 aaPredicted RBP21.8■■□□□ 1.08
VPS28-205ENST00000526204 PITX1P78337 314 aaPredicted RBP21.8■■□□□ 1.08
VPS28-205ENST00000526204 NME3Q13232 169 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 PID1Q7Z2X4 250 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 PIWIL2Q8TC59 973 aaKnown RBP21.8■■□□□ 1.08
VPS28-205ENST00000526204 STMN2Q93045 179 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 FAM96AQ9H5X1 160 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 SYBUQ9NX95 663 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 EMCNQ9ULC0 261 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 GNEQ9Y223 722 aaKnown RBP21.8■■□□□ 1.08
VPS28-205ENST00000526204 SYNJ2BP-COX16A0A087WUM0 186 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 SPECC1L-ADORA2AF8WAN1 911 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 CLDN5O00501 218 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 GABRDO14764 452 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 DCLK1O15075 740 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 ENO1P06733 434 aaKnown RBP21.8■■□□□ 1.08
VPS28-205ENST00000526204 GRK2P25098 689 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 ADRA1BP35368 520 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 GP5P40197 560 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 FAM110CQ1W6H9 321 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 ACSBG2Q5FVE4 666 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 GRTP1Q5TC63 336 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 BSPRYQ5W0U4 402 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 CLEC20AQ6ZU45 233 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 PAQR9Q6ZVX9 377 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 RASSF3Q86WH2 238 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 TREML1Q86YW5 311 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 NTAN1Q96AB6 310 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 CPNE1Q99829 537 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 CCDC106Q9BWC9 280 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 PIGVQ9NUD9 493 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 COX16Q9P0S2 106 aa21.8■■□□□ 1.08
VPS28-205ENST00000526204 BEST1O76090 585 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 ATP6V1C1P21283 382 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 HCAR3P49019 387 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 TKTL1P51854 596 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 DNAL1Q4LDG9 190 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms