RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 GLI1P08151 1106 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 CEACAM1P13688 526 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 TYRP14679 529 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 CHRNB2P17787 502 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 GABRG2P18507 467 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 CSRP1P21291 193 aaKnown RBP10.55□□□□□ -0.72
VPS28-204ENST00000526054 TNFAIP3P21580 790 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 NTSR1P30989 418 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 CASP14P31944 242 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 PRKCIP41743 596 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 WASP42768 502 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 NSFP46459 744 aaKnown RBP10.55□□□□□ -0.72
VPS28-204ENST00000526054 RPL6Q02878 288 aaKnown RBP10.55□□□□□ -0.72
VPS28-204ENST00000526054 EFEMP1Q12805 493 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 TDRD12Q587J7 1177 aaKnown RBP10.55□□□□□ -0.72
VPS28-204ENST00000526054 SPDYCQ5MJ68 293 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 EGFLAMQ63HQ2 1017 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 OR6B2Q6IFH4 312 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 TPGS1Q6ZTW0 290 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 HTR3DQ70Z44 454 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 IRF2BP2Q7Z5L9 587 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 VPS36Q86VN1 386 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 SCUBE3Q8IX30 993 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 CHPFQ8IZ52 775 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 CLEC4CQ8WTT0 213 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 EDEM1Q92611 657 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 C18orf8Q96DM3 657 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 XPO6Q96QU8 1125 aaKnown RBP10.55□□□□□ -0.72
VPS28-204ENST00000526054 KLF16Q9BXK1 252 aaPredicted RBP10.55□□□□□ -0.72
VPS28-204ENST00000526054 TMEM74BQ9NUR3 256 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 ASNSD1Q9NWL6 643 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 MARK1Q9P0L2 795 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 BZW2Q9Y6E2 419 aaKnown RBP10.55□□□□□ -0.72
VPS28-204ENST00000526054 CACNA1GO43497 2377 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 PI4KAP42356 2102 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 PCDH15Q96QU1 1955 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 CAPN9O14815 690 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 MDM4O15151 490 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 GREM1O60565 184 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 HSF2BPO75031 334 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 ENGP17813 658 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 ITPKAP23677 461 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 HOXD12P35452 270 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 SCNN1AP37088 669 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 GABRB2P47870 512 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 ATXN3P54252 364 aaPredicted RBP10.54□□□□□ -0.72
VPS28-204ENST00000526054 COG7P83436 770 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 SLC6A3Q01959 620 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 CENPCQ03188 943 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 CLEC16AQ2KHT3 1053 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 TSR1Q2NL82 804 aaKnown RBP10.54□□□□□ -0.72
VPS28-204ENST00000526054 EFHC1Q5JVL4 640 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 PEAR1Q5VY43 1037 aaPredicted RBP10.54□□□□□ -0.72
VPS28-204ENST00000526054 E4F1Q66K89 784 aaPredicted RBP10.54□□□□□ -0.72
VPS28-204ENST00000526054 SDE2Q6IQ49 451 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 MSANTD2Q6P1R3 559 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 SLC23A3Q6PIS1 610 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 OLFML1Q6UWY5 402 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 UNQ6494/PRO21346Q6UXR6 183 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 SLC36A4Q6YBV0 504 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 FAM183BPQ6ZVS7 135 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 BEND5Q7L4P6 421 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 TMC6Q7Z403 805 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 MIB1Q86YT6 1006 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 DEFB124Q8NES8 71 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 CPA5Q8WXQ8 436 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 BHMTQ93088 406 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 MRFAP1L1Q96HT8 127 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 HAUS4Q9H6D7 363 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 GRPEL1Q9HAV7 217 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 POPDC2Q9HBU9 364 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 ZNHIT6Q9NWK9 470 aaKnown RBP10.54□□□□□ -0.72
VPS28-204ENST00000526054 MARCH2Q9P0N8 246 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 WDR35Q9P2L0 1181 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 TJP2Q9UDY2 1190 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 PILRBQ9UKJ0 227 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 NUDT5Q9UKK9 219 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 STARD13Q9Y3M8 1113 aa10.54□□□□□ -0.72
VPS28-204ENST00000526054 ASCC3Q8N3C0 2202 aaKnown RBP10.54□□□□□ -0.72
VPS28-204ENST00000526054 CEP295Q9C0D2 2601 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 A0A1W2PQF6 199 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 SLC12A8A0AV02 714 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 C1QTNF9BB2RNN3 333 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 ZNF217O75362 1048 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 DAB1O75553 588 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 SERPING1P05155 500 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 CALB1P05937 261 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 PROS1P07225 676 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 C1QTNF9P0C862 333 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 UNGP13051 313 aaPredicted RBP10.53□□□□□ -0.72
VPS28-204ENST00000526054 NCAM1P13591 858 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 NDUFV2P19404 249 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 MMP8P22894 467 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 DGKGP49619 791 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 ZNF75DP51815 510 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 YWHAZP63104 245 aaKnown RBP10.53□□□□□ -0.72
VPS28-204ENST00000526054 FAM102AQ5T9C2 384 aaPredicted RBP10.53□□□□□ -0.72
VPS28-204ENST00000526054 KIAA1211LQ6NV74 962 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 MMS22LQ6ZRQ5 1243 aa10.53□□□□□ -0.72
VPS28-204ENST00000526054 SLC26A9Q7LBE3 791 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms