RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 LEFTY2O00292 366 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 RNF40O75150 1001 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 MAP3K6O95382 1288 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 ERCC5P28715 1186 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 ATP5C1P36542 298 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 DGKEP52429 567 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 KCNC3Q14003 757 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 BSPRYQ5W0U4 402 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 KCTD16Q68DU8 428 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 THOC7Q6I9Y2 204 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 PKN3Q6P5Z2 889 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 TFAP2DQ7Z6R9 452 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 IRF7Q92985 503 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 RPL10LQ96L21 214 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 MYOCQ99972 504 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 MARCH2Q9P0N8 246 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 XPO7Q9UIA9 1087 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 ACACAQ13085 2346 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 ATP8B3O60423 1300 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 CARNS1A5YM72 827 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 GNGT1P63211 74 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 KCTD19Q17RG1 926 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 SNX19Q92543 992 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 CEP63Q96MT8 703 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 FERD3LQ96RJ6 166 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 SPON2Q9BUD6 331 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 TLR8Q9NR97 1041 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 DNAJC17Q9NVM6 304 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 SPO11Q9Y5K1 396 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 ZNF638Q14966 1978 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 COL4A3Q01955 1670 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 FAM237AA0A1B0GTK4 181 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 MOSPD3O75425 235 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 TPPPO94811 219 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 ZBED1O96006 694 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 HLA-EP13747 358 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 WARSP23381 471 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 TARSP26639 723 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 ADKP55263 362 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 HTR4Q13639 388 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 HLTFQ14527 1009 aaKnown RBP eCLIP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 RWDD4Q6NW29 188 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 HDXQ7Z353 690 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 FAM131BQ86XD5 332 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 SLC9A9Q8IVB4 645 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 CARNMT1Q8N4J0 409 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 FAM160A2Q8N612 972 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 TMEM105Q8N8V8 129 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 EDAQ92838 391 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 ZSWIM1Q9BR11 485 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 RETREG1Q9H6L5 497 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 C11orf16Q9NQ32 467 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 DDIT4Q9NX09 232 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 CACNA2D2Q9NY47 1150 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 APEX2Q9UBZ4 518 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 PCSK1NQ9UHG2 260 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 EPG5Q9HCE0 2579 aa8.17□□□□□ -1.1
LIMCH1-219ENST00000514096 CACNA1BQ00975 2339 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 ZNF840PA6NDX5 716 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 LAMTOR5O43504 91 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 RALAP11233 206 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 FERP16591 822 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 AVPR2P30518 371 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 ROR2Q01974 943 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 SYPL2Q5VXT5 272 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 CEP68Q76N32 757 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 FRMD1Q8N878 549 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 FAM76AQ8TAV0 307 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 CCDC110Q8TBZ0 833 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 CYB5D2Q8WUJ1 264 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 LRRN4Q8WUT4 740 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 PMM1Q92871 262 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 CCDC68Q9H2F9 335 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 IL21Q9HBE4 155 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 ARHGEF4Q9NR80 690 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 IKBKGQ9Y6K9 419 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 COL4A4P53420 1690 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 MACROD2A1Z1Q3 448 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 GABRDO14764 452 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 UCHL3P15374 230 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 CORO1AP31146 461 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 SLC8A1P32418 973 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 AARSP49588 968 aaKnown RBP eCLIP8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 AP3M2P53677 418 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 SIGLEC14Q08ET2 396 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 PPP1R7Q15435 360 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 KAZNQ674X7 775 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 SPATS2Q86XZ4 545 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 FBXL6Q8N531 539 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 C1QTNF1Q9BXJ1 281 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 MAGEB5Q9BZ81 275 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 STRIP2Q9ULQ0 834 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 IGF2RP11717 2491 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 FREM2Q5SZK8 3169 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 MAP3K13O43283 966 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 TADA3O75528 432 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 GNA14O95837 355 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 H2AFXP16104 143 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 GNG11P61952 73 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 YWHAGP61981 247 aaKnown RBP eCLIP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms