RNA–Protein interactions for RNA: ENST00000508284.5

SQSTM1-212, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-212ENST00000508284 LYSMD4Q5XG99 296 aa18.73■□□□□ 0.59
SQSTM1-212ENST00000508284 HGSNATQ68CP4 663 aa18.73■□□□□ 0.59
SQSTM1-212ENST00000508284 KIAA1211LQ6NV74 962 aa18.73■□□□□ 0.59
SQSTM1-212ENST00000508284 SLC36A4Q6YBV0 504 aa18.73■□□□□ 0.59
SQSTM1-212ENST00000508284 ANKS1BQ7Z6G8 1248 aa18.73■□□□□ 0.59
SQSTM1-212ENST00000508284 ZSCAN30Q86W11 494 aa18.73■□□□□ 0.59
SQSTM1-212ENST00000508284 CCDC170Q8IYT3 715 aa18.73■□□□□ 0.59
SQSTM1-212ENST00000508284 CIPCQ9C0C6 399 aa18.73■□□□□ 0.59
SQSTM1-212ENST00000508284 MIS12Q9H081 205 aa18.73■□□□□ 0.59
SQSTM1-212ENST00000508284 ST7Q9NRC1 585 aa18.73■□□□□ 0.59
SQSTM1-212ENST00000508284 STON1Q9Y6Q2 735 aa18.73■□□□□ 0.59
SQSTM1-212ENST00000508284 SOWAHDA6NJG2 315 aa18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 FOXN3O00409 490 aaPredicted RBP18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 NPC1O15118 1278 aa18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 MSI1O43347 362 aaKnown RBP18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 GFPT2O94808 682 aa18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 LTFP02788 710 aa18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 NDUFV2P19404 249 aa18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 PTGER3P43115 390 aa18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 KLHL30Q0D2K2 578 aa18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 FAM217AQ8IXS0 508 aa18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 TMA16Q96EY4 203 aaKnown RBP18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 SLC2A11Q9BYW1 496 aa18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 ARHGAP20Q9P2F6 1191 aa18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 CYP8B1Q9UNU6 501 aa18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 CNTN6Q9UQ52 1028 aa18.72■□□□□ 0.59
SQSTM1-212ENST00000508284 LNP1A1A4G5 178 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 PATE3B3GLJ2 98 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 MED7O43513 233 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 SYNCRIPO60506 623 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 LATS1O95835 1130 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 PNMA6AP0CW24 399 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 CYLC1P35663 651 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 DPP6P42658 865 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 ZNF132P52740 706 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 EIF4HQ15056 248 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 ADGRF1Q5T601 910 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 KIAA1324Q6UXG2 1013 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 IRF2BP2Q7Z5L9 587 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 SYT12Q8IV01 421 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 UNC45BQ8IWX7 931 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 DEFB119Q8N690 84 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 CLEC4CQ8WTT0 213 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 FAM149B1Q96BN6 582 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 PIWIL1Q96J94 861 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 CHP1Q99653 195 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 NUSAP1Q9BXS6 441 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 ELOVL2Q9NXB9 296 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 THAP10Q9P2Z0 257 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 CLEC4EQ9ULY5 219 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 PYCARDQ9ULZ3 195 aa18.71■□□□□ 0.59
SQSTM1-212ENST00000508284 IGHV1OR15-9A0A0B4J2B8 117 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 C4orf47A7E2U8 309 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 SART1O43290 800 aaKnown RBP18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 GABBR2O75899 941 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 ADRB1P08588 477 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 NCAM1P13591 858 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 USP8P40818 1118 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 IL12RB1P42701 662 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 ACADSBP45954 432 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 SLC11A2P49281 568 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 TBX4P57082 545 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 TRIM61Q5EBN2 209 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 DAB2IPQ5VWQ8 1189 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 NUGGCQ68CJ6 796 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 MSANTD2Q6P1R3 559 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 RAD9BQ6WBX8 426 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 VPS36Q86VN1 386 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 NUP205Q92621 2012 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 MRGPRX1Q96LB2 322 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 SLC6A17Q9H1V8 727 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 DEF6Q9H4E7 631 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 NHEJ1Q9H9Q4 299 aaPredicted RBP18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 CD248Q9HCU0 757 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 TMEM9BQ9NQ34 198 aa18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 ATXN2Q99700 1313 aaKnown RBP18.7■□□□□ 0.58
SQSTM1-212ENST00000508284 THAP12O43422 761 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 TIMM44O43615 452 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 NDUFS2O75306 463 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 ITPKAP23677 461 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 HOXD9P28356 352 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 GNA15P30679 374 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 GPD2P43304 727 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 BPIFB4P59827 614 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 IRX4P78413 519 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 ZNF33AQ06730 810 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 LMAN2Q12907 356 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 FUT11Q495W5 492 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 SCUBE3Q8IX30 993 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 EPS8L1Q8TE68 723 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 CCDC42Q96M95 316 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 HAUS4Q9H6D7 363 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 PRDM16Q9HAZ2 1276 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 TMEM74BQ9NUR3 256 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 EVLQ9UI08 416 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 STOML2Q9UJZ1 356 aa18.69■□□□□ 0.58
SQSTM1-212ENST00000508284 LAMA1P25391 3075 aa18.68■□□□□ 0.58
SQSTM1-212ENST00000508284 CNOT1A5YKK6 2376 aaKnown RBP18.68■□□□□ 0.58
SQSTM1-212ENST00000508284 GON4LQ3T8J9 2241 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms