RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 USP39Q53GS9 565 aaKnown RBP8.38□□□□□ -1.07
SCN1A-207ENST00000507401 EOGTQ5NDL2 527 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 C10orf120Q5SQS8 335 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 BEND6Q5SZJ8 279 aaPredicted RBP8.38□□□□□ -1.07
SCN1A-207ENST00000507401 C6orf118Q5T5N4 469 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 LCLAT1Q6UWP7 414 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 TMC6Q7Z403 805 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 TRMT11Q7Z4G4 463 aaKnown RBP8.38□□□□□ -1.07
SCN1A-207ENST00000507401 YTHDF3Q7Z739 585 aaKnown RBP8.38□□□□□ -1.07
SCN1A-207ENST00000507401 RASSF3Q86WH2 238 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 TRIM59Q8IWR1 403 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 SCML4Q8N228 414 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 TSTD1Q8NFU3 115 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 LMO3Q8TAP4 145 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 WBP2Q969T9 261 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 CNOT6LQ96LI5 555 aaKnown RBP8.38□□□□□ -1.07
SCN1A-207ENST00000507401 NT5C1BQ96P26 610 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 XPO6Q96QU8 1125 aaKnown RBP8.38□□□□□ -1.07
SCN1A-207ENST00000507401 CARD6Q9BX69 1037 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 PARD6BQ9BYG5 372 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 ST7Q9NRC1 585 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 SEMA4GQ9NTN9 838 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 HESX1Q9UBX0 185 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.38□□□□□ -1.07
SCN1A-207ENST00000507401 FBXO10Q9UK96 956 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 TSPAN16Q9UKR8 245 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 PCDHGA5Q9Y5G8 931 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 MYO16Q9Y6X6 1858 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 CACNA1AO00555 2505 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 CEP250Q9BV73 2442 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 DCHS1Q96JQ0 3298 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 TARSL2A2RTX5 802 aaKnown RBP8.37□□□□□ -1.07
SCN1A-207ENST00000507401 O00370 1275 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 KIF5CO60282 957 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 CACNG3O60359 315 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 SASH3O75995 380 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 STC2O76061 302 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 RHOBTB1O94844 696 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 ZNF806P0C7X5 589 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 SETSIPP0DME0 302 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 HOXC13P31276 330 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 TKTL1P51854 596 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 BCAT1P54687 386 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 YWHAGP61981 247 aaKnown RBP eCLIP8.37□□□□□ -1.07
SCN1A-207ENST00000507401 BST2Q10589 180 aaKnown RBP8.37□□□□□ -1.07
SCN1A-207ENST00000507401 PAK1Q13153 545 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 E2F5Q15329 346 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 LPAL2Q16609 132 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 RSPO4Q2I0M5 234 aaPredicted RBP8.37□□□□□ -1.07
SCN1A-207ENST00000507401 KLHL10Q6JEL2 608 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 KBTBD6Q86V97 674 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 C12orf40Q86WS4 652 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 TTC30AQ86WT1 665 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 VSTM4Q8IW00 320 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 AOPEPQ8N6M6 819 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 NAT16Q8N8M0 369 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 IL17RCQ8NAC3 791 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 SLC35F5Q8WV83 523 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 FAM81BQ96LP2 452 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 HHIPQ96QV1 700 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 BBS2Q9BXC9 721 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 DUSP15Q9H1R2 295 aaPredicted RBP8.37□□□□□ -1.07
SCN1A-207ENST00000507401 LRRC4Q9HBW1 653 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 POLMQ9NP87 494 aaPredicted RBP8.37□□□□□ -1.07
SCN1A-207ENST00000507401 PARD6AQ9NPB6 346 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 CNGB3Q9NQW8 809 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 OLA1Q9NTK5 396 aaKnown RBP8.37□□□□□ -1.07
SCN1A-207ENST00000507401 RWDD2AQ9UIY3 292 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 CDC23Q9UJX2 597 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 STRIP2Q9ULQ0 834 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 USP18Q9UMW8 372 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 CNTN6Q9UQ52 1028 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 PPP2R2CQ9Y2T4 447 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 KIAA1549LQ6ZVL6 1849 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 RALGAPA1Q6GYQ0 2036 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 SPAG17Q6Q759 2223 aa8.37□□□□□ -1.07
SCN1A-207ENST00000507401 EML5Q05BV3 1969 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 SGK1O00141 431 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 BIN1O00499 593 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 PES1O00541 588 aaKnown RBP8.36□□□□□ -1.07
SCN1A-207ENST00000507401 SCAMP3O14828 347 aaKnown RBP8.36□□□□□ -1.07
SCN1A-207ENST00000507401 EPN2O95208 641 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 AFPP02771 609 aaKnown RBP8.36□□□□□ -1.07
SCN1A-207ENST00000507401 KLKB1P03952 638 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 CCDC175P0C221 793 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 CISD3P0C7P0 127 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 IRF1P10914 325 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 TYRP14679 529 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 CD19P15391 556 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 RDXP35241 583 aaKnown RBP8.36□□□□□ -1.07
SCN1A-207ENST00000507401 ZNF132P52740 706 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 ATXN1P54253 815 aaKnown RBP8.36□□□□□ -1.07
SCN1A-207ENST00000507401 SEC13P55735 322 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 GNG11P61952 73 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 IRX1P78414 480 aaPredicted RBP8.36□□□□□ -1.07
SCN1A-207ENST00000507401 MYL5Q02045 173 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 MESP2Q0VG99 397 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 BYSLQ13895 437 aaKnown RBP8.36□□□□□ -1.07
SCN1A-207ENST00000507401 SLMAPQ14BN4 828 aa8.36□□□□□ -1.07
SCN1A-207ENST00000507401 TRIP4Q15650 581 aaPredicted RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms