RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 GOT1P17174 413 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 DESP17661 470 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SNX16P57768 344 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 WASHC5Q12768 1159 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MAP2K5Q13163 448 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MTA1Q13330 715 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 THOC5Q13769 683 aaKnown RBP16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MUM1Q2TAK8 710 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 C16orf46Q6P387 395 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 UNC93AQ86WB7 457 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 HTR3CQ8WXA8 447 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SNX27Q96L92 541 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 GCOM2Q9BZD3 368 aaPredicted RBP16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 RNF19AQ9NV58 838 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 WBP1LQ9NX94 342 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TAGLN3Q9UI15 199 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 A0A0A0MRY4 1105 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SDR42E2A6NKP2 422 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 A8MXQ7 604 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 AP1G2O75843 785 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SNAI1O95863 264 aaPredicted RBP16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ALDOAP04075 364 aaKnown RBP16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 LCP1P13796 627 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 CNTFP26441 200 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SCNN1AP37088 669 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 FCGRTP55899 365 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 IRX4P78413 519 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 CRADDP78560 199 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TUBB3Q13509 450 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 STXBP5Q5T5C0 1151 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MBLAC2Q68D91 279 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 KYAT3Q6YP21 454 aaKnown RBP16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 LRRC74BQ6ZQY2 392 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PDCD7Q8N8D1 485 aaKnown RBP16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ZNF513Q8N8E2 541 aaPredicted RBP16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ANKRD52Q8NB46 1076 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 DTX3LQ8TDB6 740 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SCG3Q8WXD2 468 aaKnown RBP16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ARNTL2Q8WYA1 636 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TRIB2Q92519 343 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SPATA13Q96N96 652 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 LGMNQ99538 433 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 THAP1Q9NVV9 213 aa16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ITM2AO43736 263 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PDHA1P08559 390 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MLNP12872 115 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ADORA2BP29275 332 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ADCYAP1R1P41586 468 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 BST2Q10589 180 aaKnown RBP16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 DCAF4L1Q3SXM0 396 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 FASTKD1Q53R41 847 aaKnown RBP16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ATG14Q6ZNE5 492 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 LMNTD2Q8IXW0 634 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 LRRC52Q8N7C0 313 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TFB1MQ8WVM0 346 aaKnown RBP16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 KBTBD7Q8WVZ9 684 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 FAM161BQ96MY7 647 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 EIF2AQ9BY44 585 aaKnown RBP16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PDCD11Q14690 1871 aaKnown RBP16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 DPPA5A6NC42 116 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PRR5-ARHGAP8B1AHC4 643 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 STRNO43815 780 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 LYPLA1O75608 230 aaPredicted RBP16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PRKCGP05129 697 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SERPINA6P08185 405 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PDGFRBP09619 1106 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 FGF3P11487 239 aaPredicted RBP16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 LMO2P25791 158 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 FDFT1P37268 417 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ALDH18A1P54886 795 aaKnown RBP16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ARHGAP8P85298 464 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 KDSRQ06136 332 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 GLRA4Q5JXX5 417 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TEDDM1Q5T9Z0 273 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 LRRC8BQ6P9F7 803 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PACS1Q6VY07 963 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 RFX8Q6ZV50 586 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ARHGAP24Q8N264 748 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 COLGALT1Q8NBJ5 622 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 NETO2Q8NC67 525 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 XPNPEP3Q9NQH7 507 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PIH1D1Q9NWS0 290 aaKnown RBP16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 FZD10Q9ULW2 581 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 HES2Q9Y543 173 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TRIM17Q9Y577 477 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 WASF2Q9Y6W5 498 aa16.54■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 RBM47A0AV96 593 aaKnown RBP16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 HACD1B0YJ81 288 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 F8W8V4 182 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SPECC1L-ADORA2AF8WAN1 911 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 H3BRB1 525 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TM7SF2O76062 418 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 UPP2O95045 317 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ATP5BP06576 529 aaKnown RBP16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TUBP50607 506 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 BCAT1P54687 386 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 RPL10AP62906 217 aaKnown RBP16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 AP1B1Q10567 949 aa16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PDE1CQ14123 709 aaPredicted RBP16.53■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 UBAP2LQ14157 1087 aaKnown RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms