RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 UBQLN1Q9UMX0 589 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-210ENST00000494566 PIRO00625 290 aa17.02■□□□□ 0.31
CCDC88B-210ENST00000494566 ITM2AO43736 263 aa17.02■□□□□ 0.31
CCDC88B-210ENST00000494566 C6orf222P0C671 652 aaPredicted RBP17.02■□□□□ 0.31
CCDC88B-210ENST00000494566 CD1EP15812 388 aa17.02■□□□□ 0.31
CCDC88B-210ENST00000494566 SESN2P58004 480 aaPredicted RBP17.02■□□□□ 0.31
CCDC88B-210ENST00000494566 SLC34A1Q06495 639 aa17.02■□□□□ 0.31
CCDC88B-210ENST00000494566 DPYSL2Q16555 572 aa17.02■□□□□ 0.31
CCDC88B-210ENST00000494566 CFAP157Q5JU67 520 aa17.02■□□□□ 0.31
CCDC88B-210ENST00000494566 SYPL2Q5VXT5 272 aa17.02■□□□□ 0.31
CCDC88B-210ENST00000494566 HEATR6Q6AI08 1181 aaKnown RBP17.02■□□□□ 0.31
CCDC88B-210ENST00000494566 SLC26A9Q7LBE3 791 aa17.02■□□□□ 0.31
CCDC88B-210ENST00000494566 TLK2Q86UE8 772 aa17.02■□□□□ 0.31
CCDC88B-210ENST00000494566 ADGRF2Q8IZF7 708 aa17.02■□□□□ 0.31
CCDC88B-210ENST00000494566 PHACTR1Q9C0D0 580 aa17.02■□□□□ 0.31
CCDC88B-210ENST00000494566 TM9SF1O15321 606 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 AP1B1Q10567 949 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 PPP2R5DQ14738 602 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 LPCAT4Q643R3 524 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 TTC39CQ8N584 583 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 ENDOVQ8N8Q3 282 aaKnown RBP17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 E2F7Q96AV8 911 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 RTP4Q96DX8 246 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 PANX3Q96QZ0 392 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 C11orf84Q9BUA3 381 aaPredicted RBP17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 VPS11Q9H270 941 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 MAN1C1Q9NR34 630 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 ZNF358Q9NW07 568 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 WDR27A2RRH5 827 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 TXNDC9O14530 226 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 MAP3K7O43318 606 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 AMHP03971 560 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 RARBP10826 455 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 MFSD10Q14728 455 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 UBXN11Q5T124 520 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 CCNYQ8ND76 341 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 SMC1BQ8NDV3 1235 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 SIGLEC10Q96LC7 697 aa17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 PAPOLBQ9NRJ5 636 aaKnown RBP17.01■□□□□ 0.31
CCDC88B-210ENST00000494566 APOEP02649 317 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 SARNPP82979 210 aaKnown RBP17■□□□□ 0.31
CCDC88B-210ENST00000494566 TCHHL1Q5QJ38 904 aaPredicted RBP17■□□□□ 0.31
CCDC88B-210ENST00000494566 TTC39BQ5VTQ0 682 aaPredicted RBP17■□□□□ 0.31
CCDC88B-210ENST00000494566 WSCD1Q658N2 575 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 ARHGAP17Q68EM7 881 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 UNC93AQ86WB7 457 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 CDKL3Q8IVW4 592 aaPredicted RBP17■□□□□ 0.31
CCDC88B-210ENST00000494566 RNF169Q8NCN4 708 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 PPFIBP2Q8ND30 876 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 SSU72Q9NP77 194 aaKnown RBP17■□□□□ 0.31
CCDC88B-210ENST00000494566 IPPQ9Y573 584 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 NRCAMQ92823 1304 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 HMX2A2RU54 273 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 F2P00734 622 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 SETSIPP0DME0 302 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 DESP17661 470 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 TAF6P49848 677 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 MAP3K7CLP57077 242 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 PPM1JQ5JR12 505 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 KIAA0319Q5VV43 1072 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 TWF2Q6IBS0 349 aaKnown RBP17■□□□□ 0.31
CCDC88B-210ENST00000494566 NME8Q8N427 588 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 PGBD4Q96DM1 585 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 MORF4L1Q9UBU8 362 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 NUP205Q92621 2012 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 RRN3P2A6NIE6 340 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 HUS1O60921 280 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 PTPN9P43378 593 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 LILRA4P59901 499 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 SLC18A2Q05940 514 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 OTUD1Q5VV17 481 aaPredicted RBP17■□□□□ 0.31
CCDC88B-210ENST00000494566 IQSEC1Q6DN90 963 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 SLC30A9Q6PML9 568 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 ZNF467Q7Z7K2 595 aaPredicted RBP17■□□□□ 0.31
CCDC88B-210ENST00000494566 B3GALNT2Q8NCR0 500 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 MED10Q9BTT4 135 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 SAR1AQ9NR31 198 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 SCOCQ9UIL1 159 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 MTO1Q9Y2Z2 717 aaKnown RBP17■□□□□ 0.31
CCDC88B-210ENST00000494566 DERAQ9Y315 318 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 AK5Q9Y6K8 562 aa17■□□□□ 0.31
CCDC88B-210ENST00000494566 RFPL1O75677 317 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 HOXD8P13378 290 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 NCF2P19878 526 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 CCNG1P51959 295 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 ARMC3Q5W041 872 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 RAPH1Q70E73 1250 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 SMG8Q8ND04 991 aaKnown RBP16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 SLC26A7Q8TE54 656 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 DEPDC1BQ8WUY9 529 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 CENPIQ92674 756 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 ALKBH8Q96BT7 664 aaKnown RBP16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 RHOBTB2Q9BYZ6 727 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 SLC7A8Q9UHI5 535 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 LNPEPQ9UIQ6 1025 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 FAM72CH0Y354 149 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 M0QYT0 321 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 KCNK1O00180 336 aa16.99■□□□□ 0.31
CCDC88B-210ENST00000494566 USP12O75317 370 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms