RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 FNDC3BQ53EP0 1204 aaKnown RBP13.56□□□□□ -0.24
HDAC6-227ENST00000485102 SGO2Q562F6 1265 aa13.56□□□□□ -0.24
HDAC6-227ENST00000485102 MBLAC2Q68D91 279 aa13.56□□□□□ -0.24
HDAC6-227ENST00000485102 PDCD7Q8N8D1 485 aaKnown RBP13.56□□□□□ -0.24
HDAC6-227ENST00000485102 ENGASEQ8NFI3 743 aa13.56□□□□□ -0.24
HDAC6-227ENST00000485102 CYB5D2Q8WUJ1 264 aa13.56□□□□□ -0.24
HDAC6-227ENST00000485102 TTC17Q96AE7 1141 aa13.56□□□□□ -0.24
HDAC6-227ENST00000485102 LMLNQ96KR4 655 aa13.56□□□□□ -0.24
HDAC6-227ENST00000485102 RSPH9Q9H1X1 276 aaPredicted RBP13.56□□□□□ -0.24
HDAC6-227ENST00000485102 ABCB8Q9NUT2 735 aa13.56□□□□□ -0.24
HDAC6-227ENST00000485102 TSPAN16Q9UKR8 245 aa13.56□□□□□ -0.24
HDAC6-227ENST00000485102 RAXQ9Y2V3 346 aa13.56□□□□□ -0.24
HDAC6-227ENST00000485102 PCDHGA1Q9Y5H4 931 aa13.56□□□□□ -0.24
HDAC6-227ENST00000485102 COL5A1P20908 1838 aaPredicted RBP13.55□□□□□ -0.24
HDAC6-227ENST00000485102 CETN3O15182 167 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 VILLO15195 856 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 DNTTP04053 509 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 SETSIPP0DME0 302 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 VDRP11473 427 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 CDK4P11802 303 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 RACK1P63244 317 aaKnown RBP13.55□□□□□ -0.24
HDAC6-227ENST00000485102 SFSWAPQ12872 951 aaKnown RBP13.55□□□□□ -0.24
HDAC6-227ENST00000485102 CUL2Q13617 745 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 PKP1Q13835 747 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 PIK3R6Q5UE93 754 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 ZNF776Q68DI1 518 aaPredicted RBP13.55□□□□□ -0.24
HDAC6-227ENST00000485102 TMPRSS12Q86WS5 348 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 CACUL1Q86Y37 369 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 UNC45BQ8IWX7 931 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 ZC3H3Q8IXZ2 948 aaKnown RBP13.55□□□□□ -0.24
HDAC6-227ENST00000485102 FIBINQ8TAL6 211 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 IRGQQ8WZA9 623 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 NDRG1Q92597 394 aaKnown RBP13.55□□□□□ -0.24
HDAC6-227ENST00000485102 MYO19Q96H55 970 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 MMRN2Q9H8L6 949 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 HESX1Q9UBX0 185 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 SFMBT1Q9UHJ3 866 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 TPX2Q9ULW0 747 aaKnown RBP13.55□□□□□ -0.24
HDAC6-227ENST00000485102 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.55□□□□□ -0.24
HDAC6-227ENST00000485102 MAPK8IP1Q9UQF2 711 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 PTPRQQ9UMZ3 2332 aa13.55□□□□□ -0.24
HDAC6-227ENST00000485102 HELZ2Q9BYK8 2649 aaKnown RBP13.54□□□□□ -0.24
HDAC6-227ENST00000485102 A0A1B0GTQ1 180 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 A0A1W2PPC4 97 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 H0Y8X5 98 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 O00370 1275 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 ASLP04424 464 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 IGHV4-34P06331 123 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 C1SP09871 688 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 PRR29P0C7W0 189 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 EPB41P11171 864 aaKnown RBP13.54□□□□□ -0.24
HDAC6-227ENST00000485102 POLR2EP19388 210 aaKnown RBP13.54□□□□□ -0.24
HDAC6-227ENST00000485102 NDUFA8P51970 172 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 DAOAP59103 153 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 YWHAEP62258 255 aaKnown RBP13.54□□□□□ -0.24
HDAC6-227ENST00000485102 CYP4F3Q08477 520 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 ADIGQ0VDE8 80 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 GOLGA7BQ2TAP0 167 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 INAVAQ3KP66 663 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 COBLL1Q53SF7 1204 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 FAM133BQ5BKY9 247 aaKnown RBP13.54□□□□□ -0.24
HDAC6-227ENST00000485102 NUGGCQ68CJ6 796 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 LCLAT1Q6UWP7 414 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 KRBA2Q6ZNG9 492 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 UBR7Q8N806 425 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 ZNF366Q8N895 744 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 SLC35F5Q8WV83 523 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 HNRNPLLQ8WVV9 542 aaKnown RBP13.54□□□□□ -0.24
HDAC6-227ENST00000485102 SNX19Q92543 992 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 ADAMTS1Q9UHI8 967 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 NCKAP1Q9Y2A7 1128 aa13.54□□□□□ -0.24
HDAC6-227ENST00000485102 A0A1W2PQ27 194 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 A0A1W2PQ64 194 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 FSBPO95073 299 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 CD70P32970 193 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 SLC11A2P49281 568 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 HNRNPA1L2Q32P51 320 aaKnown RBP13.53□□□□□ -0.24
HDAC6-227ENST00000485102 CBWD6Q4V339 395 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 CBWD3Q5JTY5 395 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 KCNT1Q5JUK3 1230 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 CBWD5Q5RIA9 395 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 KIAA0895LQ68EN5 471 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 SIX6OS1Q8N1H7 587 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 WFDC5Q8TCV5 224 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 EDEM1Q92611 657 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 SKA1Q96BD8 255 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 EEF2KMTQ96G04 330 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 SPATA32Q96LK8 384 aa13.53□□□□□ -0.24
HDAC6-227ENST00000485102 ACE2Q9BYF1 805 aaPredicted RBP13.53□□□□□ -0.24
HDAC6-227ENST00000485102 PABPC3Q9H361 631 aaKnown RBP13.53□□□□□ -0.24
HDAC6-227ENST00000485102 TARSL2A2RTX5 802 aaKnown RBP13.52□□□□□ -0.25
HDAC6-227ENST00000485102 KCNK3O14649 394 aa13.52□□□□□ -0.25
HDAC6-227ENST00000485102 PMM2O15305 246 aa13.52□□□□□ -0.25
HDAC6-227ENST00000485102 SLC16A3O15427 465 aaKnown RBP13.52□□□□□ -0.25
HDAC6-227ENST00000485102 YKT6O15498 198 aa13.52□□□□□ -0.25
HDAC6-227ENST00000485102 ACSL4O60488 711 aa13.52□□□□□ -0.25
HDAC6-227ENST00000485102 RNASEH1O60930 286 aaKnown RBP13.52□□□□□ -0.25
HDAC6-227ENST00000485102 GABBR2O75899 941 aa13.52□□□□□ -0.25
HDAC6-227ENST00000485102 PAEPP09466 180 aa13.52□□□□□ -0.25
HDAC6-227ENST00000485102 TBXAS1P24557 533 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms