RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 E5RJQ4 531 aa22.38■■□□□ 1.17
USP40-215ENST00000484528 FGFR1OPO95684 399 aaKnown RBP22.38■■□□□ 1.17
USP40-215ENST00000484528 POLR2EP19388 210 aaKnown RBP22.38■■□□□ 1.17
USP40-215ENST00000484528 GNA15P30679 374 aa22.38■■□□□ 1.17
USP40-215ENST00000484528 RPL34P49207 117 aaKnown RBP22.38■■□□□ 1.17
USP40-215ENST00000484528 SIM1P81133 766 aaPredicted RBP22.38■■□□□ 1.17
USP40-215ENST00000484528 GRIK2Q13002 908 aa22.38■■□□□ 1.17
USP40-215ENST00000484528 CARNMT1Q8N4J0 409 aa22.38■■□□□ 1.17
USP40-215ENST00000484528 ZNF606Q8WXB4 792 aa22.38■■□□□ 1.17
USP40-215ENST00000484528 SNX19Q92543 992 aa22.38■■□□□ 1.17
USP40-215ENST00000484528 NUP58Q9BVL2 599 aa22.38■■□□□ 1.17
USP40-215ENST00000484528 XPO7Q9UIA9 1087 aaKnown RBP22.38■■□□□ 1.17
USP40-215ENST00000484528 WASF3Q9UPY6 502 aa22.38■■□□□ 1.17
USP40-215ENST00000484528 TMEM131Q92545 1883 aa22.38■■□□□ 1.17
USP40-215ENST00000484528 CABIN1Q9Y6J0 2220 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 A0A1B0GTW7 788 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 C1QTNF9BB2RNN3 333 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 CAPN9O14815 690 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 IRAK2O43187 625 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 PAPSS1O43252 624 aaPredicted RBP22.37■■□□□ 1.17
USP40-215ENST00000484528 SART1O43290 800 aaKnown RBP22.37■■□□□ 1.17
USP40-215ENST00000484528 IGLV3-19P01714 112 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 DLDP09622 509 aaKnown RBP22.37■■□□□ 1.17
USP40-215ENST00000484528 C1QTNF9P0C862 333 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 CD59P13987 128 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 SLC9A1P19634 815 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 USP8P40818 1118 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 FAM193AP78312 1265 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 MPP7Q5T2T1 576 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 TRIM65Q6PJ69 517 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 MMS22LQ6ZRQ5 1243 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 CFAP52Q8N1V2 620 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 CADM4Q8NFZ8 388 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 DNASE2BQ8WZ79 361 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 MED15Q96RN5 788 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 SCNM1Q9BWG6 230 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 SLC4A5Q9BY07 1137 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 PRSS16Q9NQE7 514 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 DNAAF2Q9NVR5 837 aaKnown RBP22.37■■□□□ 1.17
USP40-215ENST00000484528 KIAA1468Q9P260 1216 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 TJP2Q9UDY2 1190 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 EIF2B4Q9UI10 523 aaKnown RBP22.37■■□□□ 1.17
USP40-215ENST00000484528 RWDD2AQ9UIY3 292 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 TLR6Q9Y2C9 796 aa22.37■■□□□ 1.17
USP40-215ENST00000484528 TP53BP1Q12888 1972 aaPredicted RBP22.37■■□□□ 1.17
USP40-215ENST00000484528 TYW5A2RUC4 315 aaKnown RBP22.36■■□□□ 1.17
USP40-215ENST00000484528 METTL12A8MUP2 240 aa22.36■■□□□ 1.17
USP40-215ENST00000484528 BECN2A8MW95 431 aa22.36■■□□□ 1.17
USP40-215ENST00000484528 MED7O43513 233 aa22.36■■□□□ 1.17
USP40-215ENST00000484528 ATP5BP06576 529 aaKnown RBP22.36■■□□□ 1.17
USP40-215ENST00000484528 ACSL1P33121 698 aa22.36■■□□□ 1.17
USP40-215ENST00000484528 ACADSBP45954 432 aa22.36■■□□□ 1.17
USP40-215ENST00000484528 PITX1P78337 314 aaPredicted RBP22.36■■□□□ 1.17
USP40-215ENST00000484528 AZIN2Q96A70 460 aa22.36■■□□□ 1.17
USP40-215ENST00000484528 SLC39A13Q96H72 371 aa22.36■■□□□ 1.17
USP40-215ENST00000484528 CAMK1GQ96NX5 476 aa22.36■■□□□ 1.17
USP40-215ENST00000484528 C6orf106Q9H6K1 298 aaPredicted RBP22.36■■□□□ 1.17
USP40-215ENST00000484528 CHD6Q8TD26 2715 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 UPK3BL1B0FP48 263 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 UPK3BL2E5RIL1 263 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 HYAL3O43820 417 aaPredicted RBP22.35■■□□□ 1.17
USP40-215ENST00000484528 GJB3O75712 270 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 CSKP41240 450 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 RPS14P62263 151 aaKnown RBP22.35■■□□□ 1.17
USP40-215ENST00000484528 PDCLQ13371 301 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 CDH18Q13634 790 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 TAF5Q15542 800 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 ZC3H12AQ5D1E8 599 aaKnown RBP22.35■■□□□ 1.17
USP40-215ENST00000484528 MS4A13Q5J8X5 152 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 RAP1GAP2Q684P5 730 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 UNQ6494/PRO21346Q6UXR6 183 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 FIBINQ8TAL6 211 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 LMLNQ96KR4 655 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 DDX50Q9BQ39 737 aaKnown RBP22.35■■□□□ 1.17
USP40-215ENST00000484528 ADAM33Q9BZ11 813 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 INTS6Q9UL03 887 aaKnown RBP22.35■■□□□ 1.17
USP40-215ENST00000484528 SLCO1B1Q9Y6L6 691 aa22.35■■□□□ 1.17
USP40-215ENST00000484528 BCAT2O15382 392 aaPredicted RBP22.34■■□□□ 1.17
USP40-215ENST00000484528 SH3BP5O60239 455 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 APOEP02649 317 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 NUMBP49757 651 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 UBE2HP62256 183 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 NNTQ13423 1086 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 DCAF6Q58WW2 860 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 FSCBQ5H9T9 825 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 ENOSF1Q7L5Y1 443 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 CHSY1Q86X52 802 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 PASD1Q8IV76 773 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 LGI2Q8N0V4 545 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 STK32AQ8WU08 396 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 MYO19Q96H55 970 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 IRX2Q9BZI1 471 aaPredicted RBP22.34■■□□□ 1.17
USP40-215ENST00000484528 APEX2Q9UBZ4 518 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 NFE2L3Q9Y4A8 694 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 PLXNA2O75051 1894 aa22.34■■□□□ 1.17
USP40-215ENST00000484528 TRUB2O95900 331 aaKnown RBP22.33■■□□□ 1.17
USP40-215ENST00000484528 DNTTP04053 509 aa22.33■■□□□ 1.17
USP40-215ENST00000484528 CTSOP43234 321 aaPredicted RBP22.33■■□□□ 1.17
USP40-215ENST00000484528 MEA1Q16626 185 aa22.33■■□□□ 1.17
USP40-215ENST00000484528 GBP6Q6ZN66 633 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms