RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 MAP3K2Q9Y2U5 619 aa6.03□□□□□ -1.44
UPF3A-205ENST00000479712 LRRFIP2Q9Y608 721 aaKnown RBP6.03□□□□□ -1.44
UPF3A-205ENST00000479712 DNAH14Q0VDD8 3507 aa6.03□□□□□ -1.44
UPF3A-205ENST00000479712 DUOX1Q9NRD9 1551 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 RNASET2O00584 256 aaKnown RBP6.02□□□□□ -1.45
UPF3A-205ENST00000479712 PCDH17O14917 1159 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 NCAM2O15394 837 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 DCXO43602 365 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 ECE2O60344 883 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 NCR1O76036 304 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 VIPP01282 170 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 ITGB3P05106 788 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 CSF1RP07333 972 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 ARP10275 920 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 HGFP14210 728 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 PRKAR1BP31321 381 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 TNNT2P45379 298 aaPredicted RBP6.02□□□□□ -1.45
UPF3A-205ENST00000479712 PIP4K2AP48426 406 aaPredicted RBP6.02□□□□□ -1.45
UPF3A-205ENST00000479712 PDE6CP51160 858 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 CCNIQ14094 377 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 TAF12Q16514 161 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 TRIM71Q2Q1W2 868 aaKnown RBP6.02□□□□□ -1.45
UPF3A-205ENST00000479712 RABL3Q5HYI8 236 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 CCDC117Q8IWD4 279 aaPredicted RBP6.02□□□□□ -1.45
UPF3A-205ENST00000479712 ADSSL1Q8N142 457 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 OTUD7AQ8TE49 926 aaPredicted RBP6.02□□□□□ -1.45
UPF3A-205ENST00000479712 OPTNQ96CV9 577 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 UBXN10Q96LJ8 280 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 TBATAQ96M53 351 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 WWC2-AS2Q96NR7 200 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 OSBPL9Q96SU4 736 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 RBM15Q96T37 977 aaKnown RBP eCLIP6.02□□□□□ -1.45
UPF3A-205ENST00000479712 ALOXE3Q9BYJ1 711 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 ZCWPW1Q9H0M4 648 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 EPS8L2Q9H6S3 715 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 MLXIPQ9HAP2 919 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 MYOZ2Q9NPC6 264 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 NIP7Q9Y221 180 aaKnown RBP eCLIP6.02□□□□□ -1.45
UPF3A-205ENST00000479712 ATP6V0A2Q9Y487 856 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 SCN9AQ15858 1988 aa6.02□□□□□ -1.45
UPF3A-205ENST00000479712 GAGE12BA1L429 117 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 GAGE12HA6NDE8 117 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 OR2W5A6NFC9 320 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 HMX3A6NHT5 357 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 MARCH11A6NNE9 402 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 EIF3FO00303 357 aaPredicted RBP6.01□□□□□ -1.45
UPF3A-205ENST00000479712 DNPH1O43598 174 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 ACTL6BO94805 426 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 NTSR2O95665 410 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 AGR2O95994 175 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 HSP90AB1P08238 724 aaKnown RBP6.01□□□□□ -1.45
UPF3A-205ENST00000479712 ACRV1P26436 265 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 MTHFSP49914 203 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 PGDP52209 483 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 FAM189BP81408 668 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 ATP1A4Q13733 1029 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 ABLIM2Q6H8Q1 611 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 ZNF530Q6P9A1 599 aaPredicted RBP6.01□□□□□ -1.45
UPF3A-205ENST00000479712 LVRNQ6Q4G3 990 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 CCDC129Q6ZRS4 1044 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 COLGALT2Q8IYK4 626 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 FAM109AQ8N4B1 249 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 OR1N1Q8NGS0 311 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 ABHD5Q8WTS1 349 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 NACC2Q96BF6 587 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 FAM136AQ96C01 138 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 RBM17Q96I25 401 aaKnown RBP6.01□□□□□ -1.45
UPF3A-205ENST00000479712 BOD1Q96IK1 185 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 SIN3AQ96ST3 1273 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 HNRNPABQ99729 332 aaKnown RBP6.01□□□□□ -1.45
UPF3A-205ENST00000479712 RTKNQ9BST9 563 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 TP63Q9H3D4 680 aaPredicted RBP6.01□□□□□ -1.45
UPF3A-205ENST00000479712 DEF6Q9H4E7 631 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 ZNF768Q9H5H4 540 aaKnown RBP6.01□□□□□ -1.45
UPF3A-205ENST00000479712 GALNT9Q9HCQ5 603 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 CD248Q9HCU0 757 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 SAYSD1Q9NPB0 183 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 AKIP1Q9NQ31 210 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 VPS51Q9UID3 782 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 PNMA2Q9UL42 364 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 SSX2IPQ9Y2D8 614 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 TCAF1Q9Y4C2 921 aa6.01□□□□□ -1.45
UPF3A-205ENST00000479712 GCN1Q92616 2671 aaKnown RBP6.01□□□□□ -1.45
UPF3A-205ENST00000479712 MGAMO43451 1857 aa6□□□□□ -1.45
UPF3A-205ENST00000479712 MYO15AQ9UKN7 3530 aa6□□□□□ -1.45
UPF3A-205ENST00000479712 OTOFQ9HC10 1997 aa6□□□□□ -1.45
UPF3A-205ENST00000479712 SPTBN2O15020 2390 aa6□□□□□ -1.45
UPF3A-205ENST00000479712 TRGV11A0A075B6L2 103 aa6□□□□□ -1.45
UPF3A-205ENST00000479712 HSFX4A0A1B0GTS1 333 aaPredicted RBP6□□□□□ -1.45
UPF3A-205ENST00000479712 HSFX3A0A1B0GWH4 333 aaPredicted RBP6□□□□□ -1.45
UPF3A-205ENST00000479712 SNX2O60749 519 aa6□□□□□ -1.45
UPF3A-205ENST00000479712 FAM20BO75063 409 aa6□□□□□ -1.45
UPF3A-205ENST00000479712 ADORA2AP29274 412 aa6□□□□□ -1.45
UPF3A-205ENST00000479712 NTSR1P30989 418 aa6□□□□□ -1.45
UPF3A-205ENST00000479712 VAV2P52735 878 aa6□□□□□ -1.45
UPF3A-205ENST00000479712 BCAT1P54687 386 aa6□□□□□ -1.45
UPF3A-205ENST00000479712 AP2B1P63010 937 aa6□□□□□ -1.45
UPF3A-205ENST00000479712 RESTQ13127 1097 aa6□□□□□ -1.45
UPF3A-205ENST00000479712 TOB2Q14106 344 aaPredicted RBP6□□□□□ -1.45
UPF3A-205ENST00000479712 ADCK5Q3MIX3 580 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms