RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 CTU1Q7Z7A3 348 aaKnown RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 KCNMB4Q86W47 210 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 UNC5BQ8IZJ1 945 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 KCNK16Q96T55 309 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 EBNA1BP2Q99848 306 aaKnown RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 STRA6Q9BX79 667 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 TMPRSS4Q9NRS4 437 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 HACD3Q9P035 362 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 SNX10Q9Y5X0 201 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 V9GYQ6 96 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 RNF103-CHMP3A0A140T963 221 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 NCF1BA6NI72 391 aaPredicted RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 C2CD4BA6NLJ0 364 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 NCF1CA8MVU1 366 aaPredicted RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 HNRNPCL1O60812 293 aaKnown RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 NCF1P14598 390 aaPredicted RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 NFKB1P19838 968 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 SNX17Q15036 470 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 CYTH1Q15438 398 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 RAB6CQ53S08 254 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 SCARA3Q6AZY7 606 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 ZNF470Q6ECI4 717 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 USP50Q70EL3 339 aaPredicted RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 UNC93AQ86WB7 457 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 DEFB107AQ8IZN7 70 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 NUP93Q8N1F7 819 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 USP13Q92995 863 aaPredicted RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 OMDQ99983 421 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 EFHD1Q9BUP0 239 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 FAM117AQ9C073 453 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 RAB6CQ9H0N0 254 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 UPF3AQ9H1J1 476 aaKnown RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 R3HDMLQ9H3Y0 253 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 DCLRE1BQ9H816 532 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 NDFIP2Q9NV92 336 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 UTP6Q9NYH9 597 aaKnown RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 ST3GAL5Q9UNP4 418 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 ACOT9Q9Y305 439 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 ACTL7BQ9Y614 415 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 KIF3CO14782 793 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 CASQ2O14958 399 aaPredicted RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 NOL3O60936 208 aaKnown RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 CHEK2O96017 543 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 S100BP04271 92 aaPredicted RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 MMP3P08254 477 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 DARSP14868 501 aaKnown RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 NR2C2P49116 596 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 PTP4A2Q12974 167 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 PDAP1Q13442 181 aaKnown RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 PPM1JQ5JR12 505 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 FRA10AC1Q70Z53 315 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 NAF1Q96HR8 494 aaKnown RBP11.3□□□□□ -0.6
COL27A1-204ENST00000477421 EGFL8Q99944 293 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 IPPQ9Y573 584 aa11.3□□□□□ -0.6
COL27A1-204ENST00000477421 KNL1Q8NG31 2342 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 SLC12A8A0AV02 714 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 SRRM3A6NNA2 597 aaPredicted RBP11.29□□□□□ -0.6
COL27A1-204ENST00000477421 ANXA9O76027 345 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 PROCP04070 461 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 STMN1P16949 149 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 TFE3P19532 575 aaPredicted RBP11.29□□□□□ -0.6
COL27A1-204ENST00000477421 CCR1P32246 355 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 MATKP42679 507 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 MAXP61244 160 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 SLC25A3Q00325 362 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 CDK16Q00536 496 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.29□□□□□ -0.6
COL27A1-204ENST00000477421 SNX30Q5VWJ9 437 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 NT5DC4Q86YG4 428 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 ZDHHC17Q8IUH5 632 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 FBXO32Q969P5 355 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 HSFY1Q96LI6 401 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 ZNF317Q96PQ6 595 aaPredicted RBP11.29□□□□□ -0.6
COL27A1-204ENST00000477421 BTBD10Q9BSF8 475 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 XPNPEP3Q9NQH7 507 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 SUN2Q9UH99 717 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 RABGEF1Q9UJ41 708 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 ADGRA2Q96PE1 1338 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 MFSD11O43934 449 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 PIRTP0C851 137 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 CD52P31358 61 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 CERCAMQ5T4B2 595 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 TTC30AQ86WT1 665 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 SLC35B2Q8TB61 432 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 ZNF670Q9BS34 389 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 SYBUQ9NX95 663 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 SFMBT1Q9UHJ3 866 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 GON4LQ3T8J9 2241 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 A0A0G2JLL6 359 aaPredicted RBP11.29□□□□□ -0.6
COL27A1-204ENST00000477421 GRIN3BO60391 1043 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 OR4Q2P0C623 313 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 XPAP23025 273 aaPredicted RBP11.29□□□□□ -0.6
COL27A1-204ENST00000477421 EEF1B2P24534 225 aaKnown RBP11.29□□□□□ -0.6
COL27A1-204ENST00000477421 PTPN7P35236 360 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 SERPINB8P50452 374 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 ATN1P54259 1190 aaPredicted RBP11.29□□□□□ -0.6
COL27A1-204ENST00000477421 CTBP1Q13363 440 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 UBAP2LQ14157 1087 aaKnown RBP11.29□□□□□ -0.6
COL27A1-204ENST00000477421 CTXN3Q4LDR2 81 aa11.29□□□□□ -0.6
COL27A1-204ENST00000477421 SLC39A12Q504Y0 691 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms