RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 RFWD3Q6PCD5 774 aa17.53■□□□□ 0.4
SCAF11-206ENST00000474828 DCUN1D2Q6PH85 259 aa17.53■□□□□ 0.4
SCAF11-206ENST00000474828 TMEM139Q8IV31 216 aa17.53■□□□□ 0.4
SCAF11-206ENST00000474828 ARFGAP1Q8N6T3 406 aa17.53■□□□□ 0.4
SCAF11-206ENST00000474828 NIPA2Q8N8Q9 360 aa17.53■□□□□ 0.4
SCAF11-206ENST00000474828 ZNF557Q8N988 423 aaPredicted RBP17.53■□□□□ 0.4
SCAF11-206ENST00000474828 TERB1Q8NA31 727 aa17.53■□□□□ 0.4
SCAF11-206ENST00000474828 HJURPQ8NCD3 748 aaPredicted RBP17.53■□□□□ 0.4
SCAF11-206ENST00000474828 CCDC26Q8TAB7 109 aa17.53■□□□□ 0.4
SCAF11-206ENST00000474828 FAM172AQ8WUF8 416 aa17.53■□□□□ 0.4
SCAF11-206ENST00000474828 OSBPL2Q9H1P3 480 aa17.53■□□□□ 0.4
SCAF11-206ENST00000474828 KCNH6Q9H252 994 aa17.53■□□□□ 0.4
SCAF11-206ENST00000474828 INTUQ9ULD6 942 aa17.53■□□□□ 0.4
SCAF11-206ENST00000474828 CLEC4EQ9ULY5 219 aa17.53■□□□□ 0.4
SCAF11-206ENST00000474828 NDRG2Q9UN36 371 aaKnown RBP17.53■□□□□ 0.4
SCAF11-206ENST00000474828 MUC6Q6W4X9 2439 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 WDFY4Q6ZS81 3184 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 ATMINO43313 823 aaPredicted RBP17.52■□□□□ 0.4
SCAF11-206ENST00000474828 AKR1B10O60218 316 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 DCNP07585 359 aaKnown RBP17.52■□□□□ 0.4
SCAF11-206ENST00000474828 TMEM253P0C7T8 217 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 ATXN8OSP0DMR3 200 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 KIR2DL1P43626 348 aaPredicted RBP17.52■□□□□ 0.4
SCAF11-206ENST00000474828 ATP11AP98196 1134 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 AUHQ13825 339 aaKnown RBP17.52■□□□□ 0.4
SCAF11-206ENST00000474828 MANEALQ5VSG8 457 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 FBXL22Q6P050 247 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 FIBINQ8TAL6 211 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 DDI1Q8WTU0 396 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 ARHGEF26Q96DR7 871 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 NCAPGQ9BPX3 1015 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 TRIM7Q9C029 511 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 RETREG1Q9H6L5 497 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 ARHGEF4Q9NR80 690 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 HCN2Q9UL51 889 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 MIA3Q5JRA6 1907 aa17.52■□□□□ 0.4
SCAF11-206ENST00000474828 MYOFQ9NZM1 2061 aa17.52■□□□□ 0.39
SCAF11-206ENST00000474828 TRIM24O15164 1050 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 MTA2O94776 668 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 MOCS2O96007 188 aaPredicted RBP17.51■□□□□ 0.39
SCAF11-206ENST00000474828 H2AFZP0C0S5 128 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 DGKGP49619 791 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 HSF5Q4G112 596 aaPredicted RBP17.51■□□□□ 0.39
SCAF11-206ENST00000474828 RAP1GAP2Q684P5 730 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 GRAMD4Q6IC98 578 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 H2AFVQ71UI9 128 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 FAM131BQ86XD5 332 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 TMTC1Q8IUR5 882 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 SPEM1Q8N4L4 309 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 NAT16Q8N8M0 369 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 DTWD2Q8NBA8 298 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 RNF34Q969K3 372 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 DEF6Q9H4E7 631 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 DNAJC17Q9NVM6 304 aaKnown RBP17.51■□□□□ 0.39
SCAF11-206ENST00000474828 PLK2Q9NYY3 685 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 UVRAGQ9P2Y5 699 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 ZNF212Q9UDV6 495 aa17.51■□□□□ 0.39
SCAF11-206ENST00000474828 SYNJ2BP-COX16A0A087WUM0 186 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 EIF3CLB5ME19 914 aaKnown RBP17.5■□□□□ 0.39
SCAF11-206ENST00000474828 F5H5T6 163 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 STK25O00506 426 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 TSPAN3O60637 253 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 APODP05090 189 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 HLA-FP30511 346 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 PCK1P35558 622 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 RPS24P62847 133 aaKnown RBP17.5■□□□□ 0.39
SCAF11-206ENST00000474828 MRPS21P82921 87 aaKnown RBP17.5■□□□□ 0.39
SCAF11-206ENST00000474828 SEMA3BQ13214 749 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 ENPP2Q13822 863 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 CYP4V2Q6ZWL3 525 aaPredicted RBP17.5■□□□□ 0.39
SCAF11-206ENST00000474828 CHST9Q7L1S5 443 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 C14orf80Q86SX3 495 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 CHSY1Q86X52 802 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 SFTPA1Q8IWL2 248 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 MAML2Q8IZL2 1156 aaPredicted RBP17.5■□□□□ 0.39
SCAF11-206ENST00000474828 LGI2Q8N0V4 545 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 USP33Q8TEY7 942 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 IGSF8Q969P0 613 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 EIF3CQ99613 913 aaKnown RBP17.5■□□□□ 0.39
SCAF11-206ENST00000474828 PRRX2Q99811 253 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 PACSIN1Q9BY11 444 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 GRPEL1Q9HAV7 217 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 PRMT8Q9NR22 394 aaPredicted RBP17.5■□□□□ 0.39
SCAF11-206ENST00000474828 RBM12Q9NTZ6 932 aaKnown RBP17.5■□□□□ 0.39
SCAF11-206ENST00000474828 SPTLC3Q9NUV7 552 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 COX16Q9P0S2 106 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 PPARGC1AQ9UBK2 798 aaKnown RBP17.5■□□□□ 0.39
SCAF11-206ENST00000474828 NEU3Q9UQ49 428 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 TBC1D30Q9Y2I9 924 aa17.5■□□□□ 0.39
SCAF11-206ENST00000474828 A0A1B0GVM2 712 aa17.49■□□□□ 0.39
SCAF11-206ENST00000474828 TCAF2A6NFQ2 919 aa17.49■□□□□ 0.39
SCAF11-206ENST00000474828 PRRT4C9JH25 899 aa17.49■□□□□ 0.39
SCAF11-206ENST00000474828 GALR2O43603 387 aaPredicted RBP17.49■□□□□ 0.39
SCAF11-206ENST00000474828 LRCH4O75427 683 aa17.49■□□□□ 0.39
SCAF11-206ENST00000474828 LUC7L3O95232 432 aaKnown RBP17.49■□□□□ 0.39
SCAF11-206ENST00000474828 C7P10643 843 aa17.49■□□□□ 0.39
SCAF11-206ENST00000474828 TDGF1P13385 188 aa17.49■□□□□ 0.39
SCAF11-206ENST00000474828 HNRNPLP14866 589 aaKnown RBP eCLIP17.49■□□□□ 0.391e-8■■□□□ 12.8
SCAF11-206ENST00000474828 HOXA6P31267 233 aa17.49■□□□□ 0.39
SCAF11-206ENST00000474828 HADHBP55084 474 aaKnown RBP17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms