RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 ACBD3Q9H3P7 528 aa13.24□□□□□ -0.29
VPS13D-205ENST00000473099 NUDT5Q9UKK9 219 aa13.24□□□□□ -0.29
VPS13D-205ENST00000473099 LAMA3Q16787 3333 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.23□□□□□ -0.29
VPS13D-205ENST00000473099 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.23□□□□□ -0.29
VPS13D-205ENST00000473099 H3BNC9 293 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 I6L893 689 aaPredicted RBP13.23□□□□□ -0.29
VPS13D-205ENST00000473099 MTSS1O43312 755 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 STK10O94804 968 aaKnown RBP13.23□□□□□ -0.29
VPS13D-205ENST00000473099 LRIG2O94898 1065 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 OAS1P00973 400 aaKnown RBP13.23□□□□□ -0.29
VPS13D-205ENST00000473099 CA3P07451 260 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 MYBL2P10244 700 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 EPHB2P29323 1055 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 CDC25CP30307 473 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 CLCN4P51793 760 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 MLLT6P55198 1093 aaPredicted RBP13.23□□□□□ -0.29
VPS13D-205ENST00000473099 ZNF33AQ06730 810 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 GPM6BQ13491 265 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 PPM1LQ5SGD2 360 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 NPNTQ6UXI9 565 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 MIB1Q86YT6 1006 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 LEMD2Q8NC56 503 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 MICAL1Q8TDZ2 1067 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 TFB1MQ8WVM0 346 aaKnown RBP13.23□□□□□ -0.29
VPS13D-205ENST00000473099 OLFM3Q96PB7 478 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 QKIQ96PU8 341 aaKnown RBP eCLIP13.23□□□□□ -0.29
VPS13D-205ENST00000473099 FAM118BQ9BPY3 351 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 TMEM121Q9BTD3 319 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 SIK2Q9H0K1 926 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 CCSER2Q9H7U1 834 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 ANLNQ9NQW6 1124 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 TMPRSS4Q9NRS4 437 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 DTLQ9NZJ0 730 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 SAE1Q9UBE0 346 aaPredicted RBP13.23□□□□□ -0.29
VPS13D-205ENST00000473099 PPARGC1AQ9UBK2 798 aaKnown RBP13.23□□□□□ -0.29
VPS13D-205ENST00000473099 MSRAQ9UJ68 235 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 SNX24Q9Y343 169 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 C2orf16Q68DN1 1984 aa13.23□□□□□ -0.29
VPS13D-205ENST00000473099 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.22□□□□□ -0.29
VPS13D-205ENST00000473099 SOBPA7XYQ1 873 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 WASH4PA8MWX3 477 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 FAM72CH0Y354 149 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 MFSD11O43934 449 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 SEC31AO94979 1220 aaKnown RBP13.22□□□□□ -0.29
VPS13D-205ENST00000473099 LATS1O95835 1130 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 IFNB1P01574 187 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 F11P03951 625 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 POU2F2P09086 479 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 HNRNPA1P09651 372 aaKnown RBP eCLIP13.22□□□□□ -0.29
VPS13D-205ENST00000473099 TNNT3P45378 269 aaPredicted RBP13.22□□□□□ -0.29
VPS13D-205ENST00000473099 HARS2P49590 506 aaKnown RBP13.22□□□□□ -0.29
VPS13D-205ENST00000473099 GBE1Q04446 702 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 P3H1Q32P28 736 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 SPDYCQ5MJ68 293 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 FAM72AQ5TYM5 149 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 HEATR6Q6AI08 1181 aaKnown RBP13.22□□□□□ -0.29
VPS13D-205ENST00000473099 FAM72DQ6L9T8 149 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 ZC3H18Q86VM9 953 aaKnown RBP13.22□□□□□ -0.29
VPS13D-205ENST00000473099 FAM72BQ86X60 149 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 DDX42Q86XP3 938 aaKnown RBP eCLIP13.22□□□□□ -0.29
VPS13D-205ENST00000473099 LRRC49Q8IUZ0 686 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 MREGQ8N565 214 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 MRPS31Q92665 395 aaKnown RBP13.22□□□□□ -0.29
VPS13D-205ENST00000473099 ART4Q93070 314 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 PKNOX2Q96KN3 472 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 DDX50Q9BQ39 737 aaKnown RBP13.22□□□□□ -0.29
VPS13D-205ENST00000473099 VIPAS39Q9H9C1 493 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 ZDHHC18Q9NUE0 388 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 GRHL1Q9NZI5 618 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 PAK5Q9P286 719 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 ZMYM5Q9UJ78 669 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 HS3ST4Q9Y661 456 aa13.22□□□□□ -0.29
VPS13D-205ENST00000473099 IGLV3-10A0A075B6K4 115 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 HIDE1A8MVS5 230 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 E9PAM4 449 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 DNALI1O14645 258 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-205ENST00000473099 GRM6O15303 877 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 COCHO43405 550 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 TBX18O95935 607 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 MOCS2O96007 188 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-205ENST00000473099 DNAJB1P25685 340 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 DDX6P26196 483 aaKnown RBP eCLIP13.21□□□□□ -0.29
VPS13D-205ENST00000473099 IVDP26440 423 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 ECHS1P30084 290 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 SLC11A2P49281 568 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 PLTPP55058 493 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 SLC10A2Q12908 348 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-205ENST00000473099 GPS1Q13098 491 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 SLMAPQ14BN4 828 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 MORF4L2Q15014 288 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 RWDD4Q6NW29 188 aaKnown RBP13.21□□□□□ -0.29
VPS13D-205ENST00000473099 HOOK3Q86VS8 718 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 HDAC11Q96DB2 347 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 GDF15Q99988 308 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 HINFPQ9BQA5 517 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 MAGEB5Q9BZ81 275 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 ASAH2Q9NR71 780 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 ETNK2Q9NVF9 386 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 ANAPC5Q9UJX4 755 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms