RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 MCCC1Q96RQ3 725 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-209ENST00000472056 GPN1Q9HCN4 374 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-209ENST00000472056 EPB41L4AQ9HCS5 686 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-209ENST00000472056 CYLDQ9NQC7 956 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 NAALADL1Q9UQQ1 740 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 GLP2RO95838 553 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 NEDD8Q15843 81 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 OR56A4Q8NGH8 313 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 TBX20Q9UMR3 447 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 BTNL10A8MVZ5 291 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 FCHO1O14526 889 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 STOX1Q6ZVD7 989 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 CXXC5Q7LFL8 322 aaKnown RBP13.59□□□□□ -0.23
COL6A3-209ENST00000472056 SLFN11Q7Z7L1 901 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 PACS2Q86VP3 889 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 OXER1Q8TDS5 423 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 ZNF75CPQ92670 426 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-209ENST00000472056 KCTD10Q9H3F6 313 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 ANKZF1Q9H8Y5 726 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 CHP2O43745 196 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 STK4Q13043 487 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 SQLEQ14534 574 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 SMCO1Q147U7 214 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 ERMARDQ5T6L9 678 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 IZUMO1Q8IYV9 350 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 LZTR1Q8N653 840 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 SH3RF3Q8TEJ3 882 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-209ENST00000472056 QRFPRQ96P65 431 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 EHD3Q9NZN3 535 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 CARD8Q9Y2G2 431 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 RRN3P2A6NIE6 340 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 EPN2O95208 641 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 MAPK9P45984 424 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 HECTD3Q5T447 861 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 NT5DC4Q86YG4 428 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 IL22Q9GZX6 179 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 JMJD4Q9H9V9 463 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 ST3GAL5Q9UNP4 418 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 A0A088AWK7 358 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 BNIP3LO60238 219 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 KCNH1O95259 989 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 CYP11B1P15538 503 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 ZNF10P21506 573 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-209ENST00000472056 CDH17Q12864 832 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 SLC44A2Q8IWA5 706 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-209ENST00000472056 FAM126BQ8IXS8 530 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 FAM49AQ9H0Q0 323 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-209ENST00000472056 CHORDC1Q9UHD1 332 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-209ENST00000472056 RGS14O43566 566 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 NPY2RP49146 381 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 HSF2Q03933 536 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 CDKAL1Q5VV42 579 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 ANKRD13AQ8IZ07 590 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 TRPV1Q8NER1 839 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 ACOT12Q8WYK0 555 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 WDCPQ9H6R7 721 aa13.59□□□□□ -0.23
COL6A3-209ENST00000472056 GSG1L2A8MUP6 293 aa13.58□□□□□ -0.23
COL6A3-209ENST00000472056 ODC1P11926 461 aa13.58□□□□□ -0.23
COL6A3-209ENST00000472056 PPIL2Q13356 520 aa13.58□□□□□ -0.23
COL6A3-209ENST00000472056 KBTBD4Q9NVX7 518 aa13.58□□□□□ -0.23
COL6A3-209ENST00000472056 MAP2K7O14733 419 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 CHADO15335 359 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 PROSER1Q86XN7 944 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 PCYOX1Q9UHG3 505 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 OVOS2A0A0J9YW53 1432 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 OVOS2Q6IE36 1432 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 GNG14A0A1W2PPG7 69 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 SMIM22K7EJ46 135 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 DARSP14868 501 aaKnown RBP13.58□□□□□ -0.24
COL6A3-209ENST00000472056 ETS1P14921 441 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 ZRANB3Q5FWF4 1079 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 RPRD1AQ96P16 312 aaPredicted RBP13.58□□□□□ -0.24
COL6A3-209ENST00000472056 MYMKA6NI61 221 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 TPST1O60507 370 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 Q3C1V9 767 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 RNF146Q9NTX7 359 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 TBC1D30Q9Y2I9 924 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 F5H6K3 240 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 ZW10O43264 779 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 REM1O75628 298 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 LRPAP1P30533 357 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 ARPP19P56211 112 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 KLRC3Q07444 240 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 DYNLL2Q96FJ2 89 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 COPS7BQ9H9Q2 264 aaPredicted RBP13.58□□□□□ -0.24
COL6A3-209ENST00000472056 DYRK1BQ9Y463 629 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 MAGI3Q5TCQ9 1506 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 SEMA3DO95025 777 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 HPGDP15428 266 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 GPC1P35052 558 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 SLC11A2P49281 568 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 PLIN5Q00G26 463 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 NR6A1Q15406 480 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 ZFP69Q49AA0 526 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 FBXO25Q8TCJ0 367 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 UTP15Q8TED0 518 aaKnown RBP13.58□□□□□ -0.24
COL6A3-209ENST00000472056 DSN1Q9H410 356 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 TAS2R13Q9NYV9 303 aa13.58□□□□□ -0.24
COL6A3-209ENST00000472056 BBIP1A8MTZ0 92 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 HLA-DRAP01903 254 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms