RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CPSF3Q9UKF6 684 aaKnown RBP5.5□□□□□ -1.53
SYNE1-220ENST00000471834 PRR12Q9ULL5 1215 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 GYG2O15488 501 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 B4GALT4O60513 344 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 HOXB6P17509 224 aaKnown RBP5.5□□□□□ -1.53
SYNE1-220ENST00000471834 EDNRBP24530 442 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 OAZ1P54368 228 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 AP2B1P63010 937 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 DPYSL3Q14195 570 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 HIF1AQ16665 826 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 NDUFA5Q16718 116 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 ODR4Q5SWX8 454 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 PALM2Q8IXS6 379 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 MFSD4AQ8N468 514 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 TP53INP1Q96A56 240 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 TRIM4Q9C037 500 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 ZNF232Q9UNY5 417 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 NPHP3-ACAD11A0A0J9YXS1 232 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 IQANK1A0A1B0GTG1 560 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 MSCO60682 206 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 CLASP2O75122 1294 aaKnown RBP5.5□□□□□ -1.53
SYNE1-220ENST00000471834 PEX2P28328 305 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 ARL2P36404 184 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 CCT8P50990 548 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 KLF10Q13118 480 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 LRP8Q14114 963 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 DACT2Q5SW24 774 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 DCDC5Q6ZRR9 648 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 RINLQ6ZS11 566 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 ZNF365Q70YC5 407 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 ZNF554Q86TJ5 538 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 FAM160B2Q86V87 743 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 SLC47A2Q86VL8 602 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 LSMEM2Q8N112 164 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 RNF169Q8NCN4 708 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 C1orf54Q8WWF1 131 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 POP5Q969H6 163 aaKnown RBP5.5□□□□□ -1.53
SYNE1-220ENST00000471834 E2F7Q96AV8 911 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 GDF15Q99988 308 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 PDCD2LQ9BRP1 358 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 RSAD1Q9HA92 442 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 SLC38A7Q9NVC3 462 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 IRAK4Q9NWZ3 460 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 OSER1Q9NX31 292 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 FNDC1Q4ZHG4 1894 aaPredicted RBP5.5□□□□□ -1.53
SYNE1-220ENST00000471834 LOXHD1Q8IVV2 1947 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 I3L4J1 428 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 CYP26A1O43174 497 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 KRT7P08729 469 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 KRT4P19013 534 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 KDELR1P24390 212 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 CASP2P42575 452 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 SCAPQ12770 1279 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 PCLAFQ15004 111 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 NUDT18Q6ZVK8 323 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 TMEM110Q86TL2 294 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 SCAIQ8N9R8 606 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 MCPH1Q8NEM0 835 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 SLC9A7Q96T83 725 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 HTR3EA5X5Y0 456 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 DPM1O60762 260 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 KRT38O76015 456 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 H6PDO95479 791 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 CSH1P0DML2 217 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 CSH2P0DML3 217 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 RFC1P35251 1148 aaPredicted RBP5.5□□□□□ -1.53
SYNE1-220ENST00000471834 CSE1LP55060 971 aaKnown RBP5.5□□□□□ -1.53
SYNE1-220ENST00000471834 WNT7BP56706 349 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 CDKL1Q00532 357 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 TEKQ02763 1124 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 EIF4EBP2Q13542 120 aaPredicted RBP5.5□□□□□ -1.53
SYNE1-220ENST00000471834 TFDP2Q14188 446 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 MAP7Q14244 749 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 UBE2SQ16763 222 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 BOLA3Q53S33 107 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 TXNRD3NBQ6F5E7 133 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 DCUN1D2Q6PH85 259 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 PRR23CQ6ZRP0 262 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 BEND5Q7L4P6 421 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 PRSS48Q7RTY5 328 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 PHYKPLQ8IUZ5 450 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 SCML4Q8N228 414 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 ZUFSPQ96AP4 578 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 MSRAQ9UJ68 235 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 CCPG1Q9ULG6 757 aa5.5□□□□□ -1.53
SYNE1-220ENST00000471834 COL11A2P13942 1736 aaPredicted RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 C2CD4BA6NLJ0 364 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 UPK1AO00322 258 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 E2F6O75461 281 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 SEC14L2O76054 403 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 BAG2O95816 211 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 MYF6P23409 242 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 IL1R2P27930 398 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 NPTX2P47972 431 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 TMBIM6P55061 237 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 AQP4P55087 323 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 NUP107P57740 925 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 THOC5Q13769 683 aaKnown RBP5.49□□□□□ -1.53
SYNE1-220ENST00000471834 DEPDC1Q5TB30 811 aa5.49□□□□□ -1.53
SYNE1-220ENST00000471834 CDC42EP5Q6NZY7 148 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms