RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 UBE2OQ9C0C9 1292 aaKnown RBP13.52□□□□□ -0.24
NPHP3-ACAD11-201ENST00000471702 IGF2BP3O00425 579 aaKnown RBP eCLIP13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 IL6P05231 212 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MAPK10P53779 464 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PTSQ03393 145 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PKN2Q16513 984 aaKnown RBP13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RIPOR1Q6ZS17 1223 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 DNAJC9Q8WXX5 260 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SUSD6Q92537 303 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ENTPD4Q9Y227 616 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 OVOS2A0A0G2JMS6 1433 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 OVOS2A0A0J9YW53 1432 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 OVOS2Q6IE36 1432 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PLEKP08567 350 aaPredicted RBP13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MYL12AP19105 171 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PIK3R1P27986 724 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 EPS8Q12929 822 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 DPP7Q9UHL4 492 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FOXO4P98177 505 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 BNC1Q01954 994 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PREPLQ4J6C6 727 aaPredicted RBP13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SLC4A5Q9BY07 1137 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PBRM1Q86U86 1689 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SLC25A12O75746 678 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SRP54P61011 504 aaKnown RBP13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MARC1Q5VT66 337 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CEP68Q76N32 757 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FBXO36Q8NEA4 188 aa13.52□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TMEM114B3SHH9 223 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RAMP2O60895 175 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SEC24CP53992 1094 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 AP5B1Q2VPB7 878 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SLC47A2Q86VL8 602 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PROSER1Q86XN7 944 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 GRIP2Q9C0E4 1043 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SLITRK2Q9H156 845 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 EFCAB1Q9HAE3 211 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FAM50BQ9Y247 325 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 A0A1W2PQC6 194 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CENPXA8MT69 81 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MEI4A8MW99 385 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 H7C0S8 307 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 IL1BP01584 269 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NTRK1P04629 796 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CXCL8P10145 99 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TAL1P17542 331 aaPredicted RBP13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 IRX1P78414 480 aaPredicted RBP13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SPATA20Q8TB22 786 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ACER1Q8TDN7 264 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SERPINB12Q96P63 405 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 POLR1BQ9H9Y6 1135 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ASCC3Q8N3C0 2202 aaKnown RBP13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TRIM24O15164 1050 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CHP2O43745 196 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 IDH3BO43837 385 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MAGEA10P43363 369 aaPredicted RBP13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RAB2AP61019 212 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 STXBP1P61764 594 aaKnown RBP13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 RELTQ969Z4 430 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TUT1Q9H6E5 874 aaKnown RBP13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 USP20Q9Y2K6 914 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 NCAPD2Q15021 1401 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 PTPN3P26045 913 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TUBP50607 506 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FXR1P51114 621 aaKnown RBP eCLIP13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 TBX4P57082 545 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 EXOSC10Q01780 885 aaKnown RBP13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 UTS2BQ765I0 119 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SMYD1Q8NB12 490 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 COMMD9Q9P000 198 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 H3BRB1 525 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 WWP2O00308 870 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FAM20BO75063 409 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 EPORP19235 508 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MTAPQ13126 283 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SPIDRQ14159 915 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 BOLA3Q53S33 107 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ISLR2Q6UXK2 745 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 AGMOQ6ZNB7 445 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 ATP13A1Q9HD20 1204 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 INTS10Q9NVR2 710 aaKnown RBP13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 FAM153AQ9UHL3 310 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 DNAJC16Q9Y2G8 782 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SERPINF2P08697 491 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CCR1P32246 355 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CDH24Q86UP0 819 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 COLGALT1Q8NBJ5 622 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 OR10G6Q8NH81 332 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CCDC126Q96EE4 140 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SGSM3Q96HU1 749 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 EXOC2Q96KP1 924 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CXorf56Q9H5V9 222 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 JMJD4Q9H9V9 463 aa13.51□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 SPAG6O75602 509 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 CYP2F1P24903 491 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 LHX1P48742 406 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 POMZP3Q6PJE2 187 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 USP49Q70CQ1 688 aa13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 AGGF1Q8N302 714 aaeCLIP13.5□□□□□ -0.25
NPHP3-ACAD11-201ENST00000471702 MSRAQ9UJ68 235 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms