RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 SLC45A1Q9Y2W3 748 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 TLN1Q9Y490 2541 aaKnown RBP4.72□□□□□ -1.65
VPS13A-210ENST00000471439 PTPRSQ13332 1948 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 LOC285556D6RIA3 1793 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 SIPA1L3O60292 1781 aaPredicted RBP4.71□□□□□ -1.66
VPS13A-210ENST00000471439 CACNA1IQ9P0X4 2223 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 TRGV11A0A075B6L2 103 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 RHPN2P1A8MT19 583 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 BTN3A1O00481 513 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 KCNQ3O43525 872 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 NCK2O43639 380 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 KCNA2P16389 499 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 CHRM3P20309 590 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 CYP2C18P33260 490 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 CASP5P51878 434 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 RPS16P62249 146 aaKnown RBP4.71□□□□□ -1.66
VPS13A-210ENST00000471439 HDAC1Q13547 482 aaPredicted RBP4.71□□□□□ -1.66
VPS13A-210ENST00000471439 TNFAIP1Q13829 316 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 BOP1Q14137 746 aaKnown RBP4.71□□□□□ -1.66
VPS13A-210ENST00000471439 COL28A1Q2UY09 1125 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 TTLL5Q6EMB2 1281 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 USP37Q86T82 979 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 SRLQ86TD4 932 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 PDSS2Q86YH6 399 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 CCDC105Q8IYK2 499 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 ADGRG5Q8IZF4 528 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 CFAP52Q8N1V2 620 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 NGEFQ8N5V2 710 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 SLC30A5Q8TAD4 765 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 ACTRT2Q8TDY3 377 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 KBTBD7Q8WVZ9 684 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 SCAMP4Q969E2 229 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 RPS6KC1Q96S38 1066 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 UTP14AQ9BVJ6 771 aaKnown RBP4.71□□□□□ -1.66
VPS13A-210ENST00000471439 BTBD1Q9H0C5 482 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 ZNF287Q9HBT7 754 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 KIAA1586Q9HCI6 787 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 SACM1LQ9NTJ5 587 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 RLIMQ9NVW2 624 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 FLRT1Q9NZU1 646 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 COL20A1Q9P218 1284 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 MTUS1Q9ULD2 1270 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 SNX13Q9Y5W8 968 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 UTYO14607 1347 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 MAP3K15Q6ZN16 1313 aa4.71□□□□□ -1.66
VPS13A-210ENST00000471439 A0A1B0GUL7 405 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 A0A1W2PS29 197 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 TCP10L2B9ZVM9 353 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 CXCL11O14625 94 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 TOR1BO14657 336 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 PI15O43692 258 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 PPFIA2O75334 1257 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 VPS4BO75351 444 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 PIM1P11309 404 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-210ENST00000471439 TSHRP16473 764 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 ICAM3P32942 547 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 TOB1P50616 345 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-210ENST00000471439 CLCN5P51795 746 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 UCP3P55916 312 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 ZNF543Q08ER8 600 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 SLC13A2Q13183 592 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 CTBP1Q13363 440 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 HABP2Q14520 560 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-210ENST00000471439 ZNF169Q14929 603 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-210ENST00000471439 KRTAP21-3Q3LHN1 58 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 KLHDC7AQ5VTJ3 777 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 MFSD14CQ5VZR4 134 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 DPY19L2P1Q6NXN4 242 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 TAPT1Q6NXT6 567 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 SLC30A10Q6XR72 485 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 FASTKD5Q7L8L6 764 aaKnown RBP4.7□□□□□ -1.66
VPS13A-210ENST00000471439 RD3Q7Z3Z2 195 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 PPP1R32Q7Z5V6 425 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 MORC1Q86VD1 984 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 MICU3Q86XE3 530 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 LNX2Q8N448 690 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 FAM98AQ8NCA5 519 aaKnown RBP4.7□□□□□ -1.66
VPS13A-210ENST00000471439 FAM46DQ8NEK8 389 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 OR6B3Q8NGW1 331 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 SOCS4Q8WXH5 440 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 GJA10Q969M2 543 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 ZNF764Q96H86 408 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-210ENST00000471439 MED15Q96RN5 788 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 ELAC2Q9BQ52 826 aaKnown RBP4.7□□□□□ -1.66
VPS13A-210ENST00000471439 IL17RBQ9NRM6 502 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 ETAA1Q9NY74 926 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 ZNF70Q9UC06 446 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-210ENST00000471439 TAGLN3Q9UI15 199 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 TBC1D30Q9Y2I9 924 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 PCSK5Q92824 1860 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 CDK5RAP2Q96SN8 1893 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 ITPR2Q14571 2701 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 ATG2AQ2TAZ0 1938 aa4.7□□□□□ -1.66
VPS13A-210ENST00000471439 RFX7Q2KHR2 1363 aa4.69□□□□□ -1.66
VPS13A-210ENST00000471439 LRRK2Q5S007 2527 aa4.69□□□□□ -1.66
VPS13A-210ENST00000471439 RALGAPA1Q6GYQ0 2036 aa4.69□□□□□ -1.66
VPS13A-210ENST00000471439 PRAMEF33A0A0G2JMD5 474 aa4.69□□□□□ -1.66
VPS13A-210ENST00000471439 MYADML2A6NDP7 307 aa4.69□□□□□ -1.66
VPS13A-210ENST00000471439 POM121BA6NF01 834 aa4.69□□□□□ -1.66
VPS13A-210ENST00000471439 ISM1B1AKI9 464 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms