RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 NEU3Q9UQ49 428 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 ALG6Q9Y672 507 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 KIAA1549LQ6ZVL6 1849 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 SHISA7A6NL88 538 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 PRPSAP2O60256 369 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 NFATC1O95644 943 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 RARAP10276 462 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 DESP17661 470 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 SSR1P43307 286 aaKnown RBP15.29■□□□□ 0.04
COL9A3-209ENST00000469852 NAP1L1P55209 391 aaKnown RBP15.29■□□□□ 0.04
COL9A3-209ENST00000469852 RPS24P62847 133 aaKnown RBP15.29■□□□□ 0.04
COL9A3-209ENST00000469852 ITPRIPL2Q3MIP1 535 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 MANEALQ5VSG8 457 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 C11orf63Q6NUN7 778 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 ZNF662Q6ZS27 426 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 HAPLN3Q96S86 360 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 KCTD15Q96SI1 283 aaPredicted RBP15.29■□□□□ 0.04
COL9A3-209ENST00000469852 KLHL11Q9NVR0 708 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 MARK1Q9P0L2 795 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 VANGL2Q9ULK5 521 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 AP4E1Q9UPM8 1137 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 DOCK4Q8N1I0 1966 aa15.29■□□□□ 0.04
COL9A3-209ENST00000469852 E9PAM4 449 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 NEDD8-MDP1E9PL57 170 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 TRIM24O15164 1050 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 PALMO75781 387 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 PENKP01210 267 aaPredicted RBP15.28■□□□□ 0.04
COL9A3-209ENST00000469852 ADH5P11766 374 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 HOXD9P28356 352 aaPredicted RBP15.28■□□□□ 0.04
COL9A3-209ENST00000469852 GJA4P35212 333 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 CHKAP35790 457 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 MESP2Q0VG99 397 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 SEMA3BQ13214 749 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 ANO4Q32M45 955 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 ARL13BQ3SXY8 428 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 ERMARDQ5T6L9 678 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 TXNDC11Q6PKC3 985 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 DAAM2Q86T65 1068 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 TXLNBQ8N3L3 684 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 CPA6Q8N4T0 437 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 NAT16Q8N8M0 369 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 WFDC5Q8TCV5 224 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 CSGALNACT1Q8TDX6 532 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 HSPH1Q92598 858 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 DNASE1L2Q92874 299 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 BBS2Q9BXC9 721 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 IRX2Q9BZI1 471 aaPredicted RBP15.28■□□□□ 0.04
COL9A3-209ENST00000469852 TSGA10Q9BZW7 698 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 OSBPL2Q9H1P3 480 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 TRPV5Q9NQA5 729 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 TRMT1Q9NXH9 659 aaKnown RBP15.28■□□□□ 0.04
COL9A3-209ENST00000469852 OR12D3Q9UGF7 316 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 LCMT1Q9UIC8 334 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 CA14Q9ULX7 337 aa15.28■□□□□ 0.04
COL9A3-209ENST00000469852 KRBA1A5PL33 1030 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 PRR33A8MZF0 331 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 F5H5T6 163 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 HOXC11O43248 304 aaPredicted RBP15.27■□□□□ 0.04
COL9A3-209ENST00000469852 KRT86O43790 486 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 TBL1XO60907 577 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 SRGAP2O75044 1071 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 CNTN5O94779 1100 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 ADH1CP00326 375 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 TNNT1P13805 278 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 TYRP14679 529 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 L1CAMP32004 1257 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 OPRD1P41143 372 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 SLC6A11P48066 632 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 MARCKSL1P49006 195 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 MPPE1Q53F39 396 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 ALFQ53S48 1182 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 EFHC2Q5JST6 749 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 RNF43Q68DV7 783 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 ASTLQ6HA08 431 aaPredicted RBP15.27■□□□□ 0.04
COL9A3-209ENST00000469852 C17orf53Q8N3J3 647 aaPredicted RBP15.27■□□□□ 0.04
COL9A3-209ENST00000469852 DDI1Q8WTU0 396 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 CD101Q93033 1021 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 TMA16Q96EY4 203 aaKnown RBP15.27■□□□□ 0.04
COL9A3-209ENST00000469852 C1orf74Q96LT6 269 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 RPRD1AQ96P16 312 aaPredicted RBP15.27■□□□□ 0.04
COL9A3-209ENST00000469852 DHX35Q9H5Z1 703 aaKnown RBP15.27■□□□□ 0.04
COL9A3-209ENST00000469852 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.27■□□□□ 0.04
COL9A3-209ENST00000469852 TMEM51Q9NW97 253 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 MPP6Q9NZW5 540 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 STIM2Q9P246 746 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 PIAS3Q9Y6X2 628 aa15.27■□□□□ 0.04
COL9A3-209ENST00000469852 IGLV3-10A0A075B6K4 115 aa15.26■□□□□ 0.03
COL9A3-209ENST00000469852 DRGXA6NNA5 263 aa15.26■□□□□ 0.03
COL9A3-209ENST00000469852 SPECC1L-ADORA2AF8WAN1 911 aa15.26■□□□□ 0.03
COL9A3-209ENST00000469852 SPOPO43791 374 aa15.26■□□□□ 0.03
COL9A3-209ENST00000469852 CREB3O43889 395 aa15.26■□□□□ 0.03
COL9A3-209ENST00000469852 LRIG2O94898 1065 aa15.26■□□□□ 0.03
COL9A3-209ENST00000469852 FTCDO95954 541 aa15.26■□□□□ 0.03
COL9A3-209ENST00000469852 CD48P09326 243 aa15.26■□□□□ 0.03
COL9A3-209ENST00000469852 CTHP32929 405 aa15.26■□□□□ 0.03
COL9A3-209ENST00000469852 SLC1A1P43005 524 aa15.26■□□□□ 0.03
COL9A3-209ENST00000469852 ARSEP51690 589 aa15.26■□□□□ 0.03
COL9A3-209ENST00000469852 AIF1P55008 147 aa15.26■□□□□ 0.03
COL9A3-209ENST00000469852 ZXDAP98168 799 aa15.26■□□□□ 0.03
COL9A3-209ENST00000469852 PFKPQ01813 784 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms