RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 APTXQ7Z2E3 356 aaKnown RBP23.82■■□□□ 1.4
PTPN4-208ENST00000460289 PRICKLE1Q96MT3 831 aaPredicted RBP23.82■■□□□ 1.4
PTPN4-208ENST00000460289 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP23.82■■□□□ 1.4
PTPN4-208ENST00000460289 COX16Q9P0S2 106 aa23.82■■□□□ 1.4
PTPN4-208ENST00000460289 CALCOCO1Q9P1Z2 691 aa23.82■■□□□ 1.4
PTPN4-208ENST00000460289 XPO7Q9UIA9 1087 aaKnown RBP23.82■■□□□ 1.4
PTPN4-208ENST00000460289 NOCTQ9UK39 431 aaKnown RBP23.82■■□□□ 1.4
PTPN4-208ENST00000460289 STAP1Q9ULZ2 295 aa23.82■■□□□ 1.4
PTPN4-208ENST00000460289 SDK1Q7Z5N4 2213 aa23.82■■□□□ 1.4
PTPN4-208ENST00000460289 SPTBN4Q9H254 2564 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 ATP1A3P13637 1013 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 NDUFV2P19404 249 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 MPLP40238 635 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 RNASE9P60153 205 aaKnown RBP23.81■■□□□ 1.4
PTPN4-208ENST00000460289 RPS24P62847 133 aaKnown RBP23.81■■□□□ 1.4
PTPN4-208ENST00000460289 CREB5Q02930 508 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 KLHL40Q2TBA0 621 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 RAP1GAP2Q684P5 730 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 SERPINA13PQ6UXR4 307 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 LPCAT2Q7L5N7 544 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 ADIPOR2Q86V24 386 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 CHSY1Q86X52 802 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 LGI2Q8N0V4 545 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 CARNMT1Q8N4J0 409 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 CPA5Q8WXQ8 436 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 SORCS1Q8WY21 1168 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 RMDN1Q96DB5 314 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 VPS45Q9NRW7 570 aa23.81■■□□□ 1.4
PTPN4-208ENST00000460289 DYNC1LI1Q9Y6G9 523 aaKnown RBP23.81■■□□□ 1.4
PTPN4-208ENST00000460289 BCLAF3A2AJT9 711 aaKnown RBP23.8■■□□□ 1.4
PTPN4-208ENST00000460289 F5H5T6 163 aa23.8■■□□□ 1.4
PTPN4-208ENST00000460289 M0QYT0 321 aa23.8■■□□□ 1.4
PTPN4-208ENST00000460289 POLR2EP19388 210 aaKnown RBP23.8■■□□□ 1.4
PTPN4-208ENST00000460289 PTMSP20962 102 aa23.8■■□□□ 1.4
PTPN4-208ENST00000460289 ZNF165P49910 485 aa23.8■■□□□ 1.4
PTPN4-208ENST00000460289 NOMO3P69849 1222 aa23.8■■□□□ 1.4
PTPN4-208ENST00000460289 NME3Q13232 169 aa23.8■■□□□ 1.4
PTPN4-208ENST00000460289 CDH18Q13634 790 aa23.8■■□□□ 1.4
PTPN4-208ENST00000460289 PUM1Q14671 1186 aaKnown RBP eCLIP23.8■■□□□ 1.4
PTPN4-208ENST00000460289 RSPO4Q2I0M5 234 aaPredicted RBP23.8■■□□□ 1.4
PTPN4-208ENST00000460289 FUT11Q495W5 492 aa23.8■■□□□ 1.4
PTPN4-208ENST00000460289 PLA2G2CQ5R387 149 aa23.8■■□□□ 1.4
PTPN4-208ENST00000460289 FAM102AQ5T9C2 384 aaPredicted RBP23.8■■□□□ 1.4
PTPN4-208ENST00000460289 MBLAC2Q68D91 279 aa23.8■■□□□ 1.4
PTPN4-208ENST00000460289 SLC36A4Q6YBV0 504 aa23.8■■□□□ 1.4
PTPN4-208ENST00000460289 XYLT1Q86Y38 959 aa23.8■■□□□ 1.4
PTPN4-208ENST00000460289 CFAP52Q8N1V2 620 aa23.8■■□□□ 1.4
PTPN4-208ENST00000460289 MRGPRX1Q96LB2 322 aa23.8■■□□□ 1.4
PTPN4-208ENST00000460289 LUC7L3O95232 432 aaKnown RBP23.79■■□□□ 1.4
PTPN4-208ENST00000460289 F9P00740 461 aa23.79■■□□□ 1.4
PTPN4-208ENST00000460289 CYP1A1P04798 512 aaPredicted RBP23.79■■□□□ 1.4
PTPN4-208ENST00000460289 EPHX1P07099 455 aa23.79■■□□□ 1.4
PTPN4-208ENST00000460289 DLDP09622 509 aaKnown RBP23.79■■□□□ 1.4
PTPN4-208ENST00000460289 CD70P32970 193 aa23.79■■□□□ 1.4
PTPN4-208ENST00000460289 DHPSP49366 369 aaPredicted RBP23.79■■□□□ 1.4
PTPN4-208ENST00000460289 NAA35Q5VZE5 725 aa23.79■■□□□ 1.4
PTPN4-208ENST00000460289 TRIM72Q6ZMU5 477 aa23.79■■□□□ 1.4
PTPN4-208ENST00000460289 SND1Q7KZF4 910 aaKnown RBP eCLIP23.79■■□□□ 1.4
PTPN4-208ENST00000460289 METTL3Q86U44 580 aaKnown RBP23.79■■□□□ 1.4
PTPN4-208ENST00000460289 DHX40Q8IX18 779 aaKnown RBP23.79■■□□□ 1.4
PTPN4-208ENST00000460289 FRMD1Q8N878 549 aa23.79■■□□□ 1.4
PTPN4-208ENST00000460289 C12orf50Q8NA57 414 aaPredicted RBP23.79■■□□□ 1.4
PTPN4-208ENST00000460289 WFDC5Q8TCV5 224 aa23.79■■□□□ 1.4
PTPN4-208ENST00000460289 SLC20A1Q8WUM9 679 aa23.79■■□□□ 1.4
PTPN4-208ENST00000460289 ERLEC1Q96DZ1 483 aa23.79■■□□□ 1.4
PTPN4-208ENST00000460289 MYEOVQ96EZ4 313 aa23.79■■□□□ 1.4
PTPN4-208ENST00000460289 NPY6RQ99463 290 aa23.79■■□□□ 1.4
PTPN4-208ENST00000460289 PRDM16Q9HAZ2 1276 aa23.79■■□□□ 1.4
PTPN4-208ENST00000460289 DLL3Q9NYJ7 618 aa23.79■■□□□ 1.4
PTPN4-208ENST00000460289 MBD1Q9UIS9 605 aaPredicted RBP23.79■■□□□ 1.4
PTPN4-208ENST00000460289 PAXBP1Q9Y5B6 917 aa23.79■■□□□ 1.4
PTPN4-208ENST00000460289 H0Y626 953 aa23.78■■□□□ 1.4
PTPN4-208ENST00000460289 AP5Z1O43299 807 aa23.78■■□□□ 1.4
PTPN4-208ENST00000460289 CAVIN2O95810 425 aa23.78■■□□□ 1.4
PTPN4-208ENST00000460289 FMO1Q01740 532 aa23.78■■□□□ 1.4
PTPN4-208ENST00000460289 CCDC6Q16204 474 aa23.78■■□□□ 1.4
PTPN4-208ENST00000460289 FILIP1LQ4L180 1135 aa23.78■■□□□ 1.4
PTPN4-208ENST00000460289 FNDC3BQ53EP0 1204 aaKnown RBP23.78■■□□□ 1.4
PTPN4-208ENST00000460289 RABGAP1LQ5R372 815 aa23.78■■□□□ 1.4
PTPN4-208ENST00000460289 TTC39BQ5VTQ0 682 aaPredicted RBP23.78■■□□□ 1.4
PTPN4-208ENST00000460289 CYB5D2Q8WUJ1 264 aa23.78■■□□□ 1.4
PTPN4-208ENST00000460289 NT5C3BQ969T7 300 aa23.78■■□□□ 1.4
PTPN4-208ENST00000460289 TTC17Q96AE7 1141 aa23.78■■□□□ 1.4
PTPN4-208ENST00000460289 PGAP3Q96FM1 320 aaPredicted RBP23.78■■□□□ 1.4
PTPN4-208ENST00000460289 LMLNQ96KR4 655 aa23.78■■□□□ 1.4
PTPN4-208ENST00000460289 PRMT1Q99873 361 aaKnown RBP23.78■■□□□ 1.4
PTPN4-208ENST00000460289 TMEM245Q9H330 911 aa23.78■■□□□ 1.4
PTPN4-208ENST00000460289 KIAA1522Q9P206 1035 aaPredicted RBP23.78■■□□□ 1.4
PTPN4-208ENST00000460289 CDV3Q9UKY7 258 aaKnown RBP23.78■■□□□ 1.4
PTPN4-208ENST00000460289 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa23.77■■□□□ 1.4
PTPN4-208ENST00000460289 MOCS3O95396 460 aa23.77■■□□□ 1.4
PTPN4-208ENST00000460289 CCDC172P0C7W6 258 aa23.77■■□□□ 1.4
PTPN4-208ENST00000460289 CHRNB2P17787 502 aa23.77■■□□□ 1.4
PTPN4-208ENST00000460289 PRKCHP24723 683 aa23.77■■□□□ 1.4
PTPN4-208ENST00000460289 LMAN2Q12907 356 aa23.77■■□□□ 1.4
PTPN4-208ENST00000460289 SLC25A52Q3SY17 297 aa23.77■■□□□ 1.4
PTPN4-208ENST00000460289 KIAA1324Q6UXG2 1013 aaKnown RBP23.77■■□□□ 1.4
PTPN4-208ENST00000460289 ARCQ7LC44 396 aa23.77■■□□□ 1.4
PTPN4-208ENST00000460289 CYP2U1Q7Z449 544 aa23.77■■□□□ 1.4
PTPN4-208ENST00000460289 TMPRSS6Q8IU80 811 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms