RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 TRIM56Q9BRZ2 755 aaKnown RBP15.5■□□□□ 0.07
LDLR-202ENST00000455727 KCNK13Q9HB14 408 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 RRAGCQ9HB90 399 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 CSNK1G1Q9HCP0 422 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 MIOSQ9NXC5 875 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 COX16Q9P0S2 106 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 SIRPGQ9P1W8 387 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 LNPEPQ9UIQ6 1025 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 MYADML2A6NDP7 307 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 HHLA1C9JL84 531 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 TNPO2O14787 897 aaKnown RBP15.5■□□□□ 0.07
LDLR-202ENST00000455727 BIRC5O15392 142 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 CHRNA1P02708 482 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 TARSP26639 723 aaKnown RBP15.5■□□□□ 0.07
LDLR-202ENST00000455727 ZNF157P51786 506 aaPredicted RBP15.5■□□□□ 0.07
LDLR-202ENST00000455727 ARFIP2P53365 341 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 DBN1Q16643 649 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 CTC1Q2NKJ3 1217 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 ARL13BQ3SXY8 428 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 MTDHQ86UE4 582 aaKnown RBP15.5■□□□□ 0.07
LDLR-202ENST00000455727 SERINC5Q86VE9 423 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 SLC7A6OSQ96CW6 309 aaPredicted RBP15.5■□□□□ 0.07
LDLR-202ENST00000455727 SMARCD1Q96GM5 515 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 C7orf26Q96N11 449 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 HAO1Q9UJM8 370 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 DCTN4Q9UJW0 460 aa15.5■□□□□ 0.07
LDLR-202ENST00000455727 COL4A4P53420 1690 aaPredicted RBP15.5■□□□□ 0.07
LDLR-202ENST00000455727 GPR182O15218 404 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 LTFP02788 710 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 ERCC2P18074 760 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 PSMB4P28070 264 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 AFF1P51825 1210 aaKnown RBP15.49■□□□□ 0.07
LDLR-202ENST00000455727 INHBEP58166 350 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 CDK18Q07002 472 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 IFRD2Q12894 506 aaPredicted RBP15.49■□□□□ 0.07
LDLR-202ENST00000455727 BMPR2Q13873 1038 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 MROH9Q5TGP6 573 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 GDF6Q6KF10 455 aaPredicted RBP15.49■□□□□ 0.07
LDLR-202ENST00000455727 IFNL1Q8IU54 200 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 NDUFAF2Q8N183 169 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 TRPV1Q8NER1 839 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 IRGQQ8WZA9 623 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 KCNK16Q96T55 309 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 SLC13A1Q9BZW2 595 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 PCNTO95613 3336 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 MTSS1O43312 755 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 ZNF623O75123 536 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 WFS1O76024 890 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 NKX3-2P78367 333 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 UPP1Q16831 310 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 CASC4Q6P4E1 433 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 KYAT3Q6YP21 454 aaKnown RBP15.49■□□□□ 0.07
LDLR-202ENST00000455727 AGMOQ6ZNB7 445 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 GPRIN1Q7Z2K8 1008 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 SCML4Q8N228 414 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 C3orf58Q8NDZ4 430 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 UTP4Q969X6 686 aaKnown RBP15.49■□□□□ 0.07
LDLR-202ENST00000455727 TMEM30AQ9NV96 361 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 CACNG4Q9UBN1 327 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 HEY2Q9UBP5 337 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 STK38LQ9Y2H1 464 aa15.49■□□□□ 0.07
LDLR-202ENST00000455727 A0A0G2JND7 137 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 FAM72CH0Y354 149 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 I3L4J1 428 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 USP17L7P0C7H9 530 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 NCAM1P13591 858 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 PAX3P23760 479 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 CCND1P24385 295 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 MGAT1P26572 445 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 TPI1P60174 286 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 PPIDQ08752 370 aaKnown RBP15.48■□□□□ 0.07
LDLR-202ENST00000455727 MGAT3Q09327 533 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 CRYMQ14894 314 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 FAM72AQ5TYM5 149 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 FAM72DQ6L9T8 149 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 BHLHA9Q7RTU4 235 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 PID1Q7Z2X4 250 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 FAM72BQ86X60 149 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 ARMC2Q8NEN0 867 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 E2F7Q96AV8 911 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 SKA1Q96BD8 255 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 COLEC11Q9BWP8 271 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 UPF3AQ9H1J1 476 aaKnown RBP15.48■□□□□ 0.07
LDLR-202ENST00000455727 ANLNQ9NQW6 1124 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 ERI2A8K979 691 aaKnown RBP15.48■□□□□ 0.07
LDLR-202ENST00000455727 I6L893 689 aaPredicted RBP15.48■□□□□ 0.07
LDLR-202ENST00000455727 EZRP15311 586 aaKnown RBP15.48■□□□□ 0.07
LDLR-202ENST00000455727 CXCR3P49682 368 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 CACNA2D1P54289 1103 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 SESN2P58004 480 aaPredicted RBP15.48■□□□□ 0.07
LDLR-202ENST00000455727 TIGD5Q53EQ6 642 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 PM20D1Q6GTS8 502 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 CXCL17Q6UXB2 119 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 CEP57Q86XR8 500 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 STKLD1Q8NE28 680 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 LPPQ93052 612 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 PGBD4Q96DM1 585 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 ACBD6Q9BR61 282 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 TMEM120AQ9BXJ8 343 aa15.48■□□□□ 0.07
LDLR-202ENST00000455727 TLE6Q9H808 572 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms