RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 LYSMD4Q5XG99 296 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 HGSNATQ68CP4 663 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 KIAA1211LQ6NV74 962 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 SLC36A4Q6YBV0 504 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 ANKS1BQ7Z6G8 1248 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 ZSCAN30Q86W11 494 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 CCDC170Q8IYT3 715 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 CIPCQ9C0C6 399 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 MIS12Q9H081 205 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 ST7Q9NRC1 585 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 STON1Q9Y6Q2 735 aa18.73■□□□□ 0.59
SQSTM1-204ENST00000453046 SOWAHDA6NJG2 315 aa18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 FOXN3O00409 490 aaPredicted RBP18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 NPC1O15118 1278 aa18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 MSI1O43347 362 aaKnown RBP18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 GFPT2O94808 682 aa18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 LTFP02788 710 aa18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 NDUFV2P19404 249 aa18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 PTGER3P43115 390 aa18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 KLHL30Q0D2K2 578 aa18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 FAM217AQ8IXS0 508 aa18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 TMA16Q96EY4 203 aaKnown RBP18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 SLC2A11Q9BYW1 496 aa18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 ARHGAP20Q9P2F6 1191 aa18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 CYP8B1Q9UNU6 501 aa18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 CNTN6Q9UQ52 1028 aa18.72■□□□□ 0.59
SQSTM1-204ENST00000453046 LNP1A1A4G5 178 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 PATE3B3GLJ2 98 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 MED7O43513 233 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 SYNCRIPO60506 623 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 LATS1O95835 1130 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 PNMA6AP0CW24 399 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 CYLC1P35663 651 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 DPP6P42658 865 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 ZNF132P52740 706 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 EIF4HQ15056 248 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 ADGRF1Q5T601 910 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 KIAA1324Q6UXG2 1013 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 IRF2BP2Q7Z5L9 587 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 SYT12Q8IV01 421 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 UNC45BQ8IWX7 931 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 DEFB119Q8N690 84 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 CLEC4CQ8WTT0 213 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 FAM149B1Q96BN6 582 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 PIWIL1Q96J94 861 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 CHP1Q99653 195 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 NUSAP1Q9BXS6 441 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 ELOVL2Q9NXB9 296 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 THAP10Q9P2Z0 257 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 CLEC4EQ9ULY5 219 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 PYCARDQ9ULZ3 195 aa18.71■□□□□ 0.59
SQSTM1-204ENST00000453046 IGHV1OR15-9A0A0B4J2B8 117 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 C4orf47A7E2U8 309 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 SART1O43290 800 aaKnown RBP18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 GABBR2O75899 941 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 ADRB1P08588 477 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 NCAM1P13591 858 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 USP8P40818 1118 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 IL12RB1P42701 662 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 ACADSBP45954 432 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 SLC11A2P49281 568 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 TBX4P57082 545 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 TRIM61Q5EBN2 209 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 DAB2IPQ5VWQ8 1189 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 NUGGCQ68CJ6 796 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 MSANTD2Q6P1R3 559 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 RAD9BQ6WBX8 426 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 VPS36Q86VN1 386 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 NUP205Q92621 2012 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 MRGPRX1Q96LB2 322 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 SLC6A17Q9H1V8 727 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 DEF6Q9H4E7 631 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 NHEJ1Q9H9Q4 299 aaPredicted RBP18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 CD248Q9HCU0 757 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 TMEM9BQ9NQ34 198 aa18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 ATXN2Q99700 1313 aaKnown RBP18.7■□□□□ 0.58
SQSTM1-204ENST00000453046 THAP12O43422 761 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 TIMM44O43615 452 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 NDUFS2O75306 463 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 ITPKAP23677 461 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 HOXD9P28356 352 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 GNA15P30679 374 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 GPD2P43304 727 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 BPIFB4P59827 614 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 IRX4P78413 519 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 ZNF33AQ06730 810 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 LMAN2Q12907 356 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 FUT11Q495W5 492 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 SCUBE3Q8IX30 993 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 EPS8L1Q8TE68 723 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 CCDC42Q96M95 316 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 HAUS4Q9H6D7 363 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 PRDM16Q9HAZ2 1276 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 TMEM74BQ9NUR3 256 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 EVLQ9UI08 416 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 STOML2Q9UJZ1 356 aa18.69■□□□□ 0.58
SQSTM1-204ENST00000453046 LAMA1P25391 3075 aa18.68■□□□□ 0.58
SQSTM1-204ENST00000453046 CNOT1A5YKK6 2376 aaKnown RBP18.68■□□□□ 0.58
SQSTM1-204ENST00000453046 GON4LQ3T8J9 2241 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms