RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 USP18Q9UMW8 372 aa13.48□□□□□ -0.25
VPS33A-202ENST00000451053 CAPN6Q9Y6Q1 641 aa13.48□□□□□ -0.25
VPS33A-202ENST00000451053 PIAS3Q9Y6X2 628 aa13.48□□□□□ -0.25
VPS33A-202ENST00000451053 KRBA1A5PL33 1030 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 SHISA7A6NL88 538 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 NEDD8-MDP1E9PL57 170 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 F5H5T6 163 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 SPECC1L-ADORA2AF8WAN1 911 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 HOXC11O43248 304 aaPredicted RBP13.47□□□□□ -0.25
VPS33A-202ENST00000451053 PRPSAP2O60256 369 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 BUB1BO60566 1050 aaPredicted RBP13.47□□□□□ -0.25
VPS33A-202ENST00000451053 PENKP01210 267 aaPredicted RBP13.47□□□□□ -0.25
VPS33A-202ENST00000451053 TNNT1P13805 278 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 MAN1A1P33908 653 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 IRAK1P51617 712 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 MLLT6P55198 1093 aaPredicted RBP13.47□□□□□ -0.25
VPS33A-202ENST00000451053 TAS2R40P59535 323 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 RPS24P62847 133 aaKnown RBP13.47□□□□□ -0.25
VPS33A-202ENST00000451053 SLC25A11Q02978 314 aaKnown RBP13.47□□□□□ -0.25
VPS33A-202ENST00000451053 GAD2Q05329 585 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 SCAPQ12770 1279 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 NR1H3Q13133 447 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 MTA1Q13330 715 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 AUHQ13825 339 aaKnown RBP13.47□□□□□ -0.25
VPS33A-202ENST00000451053 MLF2Q15773 248 aaPredicted RBP13.47□□□□□ -0.25
VPS33A-202ENST00000451053 ARTNQ5T4W7 220 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 FYB2Q5VWT5 728 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 TXNRD3NBQ6F5E7 133 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 DAAM2Q86T65 1068 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 CFAP52Q8N1V2 620 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 PYROXD2Q8N2H3 581 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 TMA16Q96EY4 203 aaKnown RBP13.47□□□□□ -0.25
VPS33A-202ENST00000451053 SNRNP25Q9BV90 132 aaKnown RBP13.47□□□□□ -0.25
VPS33A-202ENST00000451053 COL25A1Q9BXS0 654 aaPredicted RBP13.47□□□□□ -0.25
VPS33A-202ENST00000451053 GOLPH3Q9H4A6 298 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 ARHGEF3Q9NR81 526 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 WNT16Q9UBV4 365 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 VANGL2Q9ULK5 521 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 AP4E1Q9UPM8 1137 aa13.47□□□□□ -0.25
VPS33A-202ENST00000451053 UNC80Q8N2C7 3258 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 GRID2IPA4D2P6 1211 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 FAM72CH0Y354 149 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 TBL1XO60907 577 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 PALMO75781 387 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 CYBBP04839 570 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 TYRP14679 529 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 HOXD9P28356 352 aaPredicted RBP13.46□□□□□ -0.25
VPS33A-202ENST00000451053 CASQ1P31415 396 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 CTHP32929 405 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 GJC1P36383 396 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 OPRD1P41143 372 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 SLC1A1P43005 524 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 SSR1P43307 286 aaKnown RBP13.46□□□□□ -0.25
VPS33A-202ENST00000451053 CA9Q16790 459 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 SMTNL2Q2TAL5 461 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 MPPE1Q53F39 396 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 EFHC2Q5JST6 749 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 DNTTIP2Q5QJE6 756 aaKnown RBP13.46□□□□□ -0.25
VPS33A-202ENST00000451053 FAM72AQ5TYM5 149 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 FAM72DQ6L9T8 149 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 TXNDC11Q6PKC3 985 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 SYT10Q6XYQ8 523 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 TPRG1Q6ZUI0 275 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 FAM72BQ86X60 149 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 CIR1Q86X95 450 aaPredicted RBP13.46□□□□□ -0.25
VPS33A-202ENST00000451053 ETFBKMTQ8IXQ9 262 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 ZNF683Q8IZ20 524 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 SIX5Q8N196 739 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 SLC35F6Q8N357 371 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 NAT16Q8N8M0 369 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 HJURPQ8NCD3 748 aaPredicted RBP13.46□□□□□ -0.25
VPS33A-202ENST00000451053 KIF18AQ8NI77 898 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 DDI1Q8WTU0 396 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 EDAQ92838 391 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 IGSF8Q969P0 613 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 C1orf74Q96LT6 269 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 NCAPGQ9BPX3 1015 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 IRX2Q9BZI1 471 aaPredicted RBP13.46□□□□□ -0.25
VPS33A-202ENST00000451053 OSBPL2Q9H1P3 480 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 C8orf33Q9H7E9 229 aaPredicted RBP13.46□□□□□ -0.25
VPS33A-202ENST00000451053 ZWILCHQ9H900 591 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 STIM2Q9P246 746 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 OR12D3Q9UGF7 316 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 DNAI1Q9UI46 699 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 CLEC4EQ9ULY5 219 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 JRKLQ9Y4A0 524 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 HYOU1Q9Y4L1 999 aa13.46□□□□□ -0.25
VPS33A-202ENST00000451053 MYOFQ9NZM1 2061 aa13.46□□□□□ -0.26
VPS33A-202ENST00000451053 CTAGE9A4FU28 777 aa13.45□□□□□ -0.26
VPS33A-202ENST00000451053 E9PAM4 449 aa13.45□□□□□ -0.26
VPS33A-202ENST00000451053 CACNG3O60359 315 aa13.45□□□□□ -0.26
VPS33A-202ENST00000451053 SRGAP2O75044 1071 aa13.45□□□□□ -0.26
VPS33A-202ENST00000451053 CD72P21854 359 aa13.45□□□□□ -0.26
VPS33A-202ENST00000451053 COMTP21964 271 aa13.45□□□□□ -0.26
VPS33A-202ENST00000451053 SLC6A11P48066 632 aa13.45□□□□□ -0.26
VPS33A-202ENST00000451053 AIF1P55008 147 aa13.45□□□□□ -0.26
VPS33A-202ENST00000451053 MESP2Q0VG99 397 aa13.45□□□□□ -0.26
VPS33A-202ENST00000451053 KCNT1Q5JUK3 1230 aa13.45□□□□□ -0.26
VPS33A-202ENST00000451053 RABGAP1LQ5R372 815 aa13.45□□□□□ -0.26
VPS33A-202ENST00000451053 ERMARDQ5T6L9 678 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms