RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 PWWP2AQ96N64 755 aa14.7□□□□□ -0.06
USP39-207ENST00000450066 RBM15Q96T37 977 aaKnown RBP eCLIP14.7□□□□□ -0.06
USP39-207ENST00000450066 LGMNQ99538 433 aa14.7□□□□□ -0.06
USP39-207ENST00000450066 FERMT1Q9BQL6 677 aa14.7□□□□□ -0.06
USP39-207ENST00000450066 NEU3Q9UQ49 428 aa14.7□□□□□ -0.06
USP39-207ENST00000450066 PRRG1O14668 218 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 TEX28O15482 410 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 RIPK2O43353 540 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 APOEP02649 317 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 SRGAP2BP0DMP2 458 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 ELF1P32519 619 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 KPNA1P52294 538 aaPredicted RBP14.69□□□□□ -0.06
USP39-207ENST00000450066 RING1Q06587 406 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 SLC29A2Q14542 456 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 MIB1Q86YT6 1006 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 CCDC33Q8N5R6 958 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 KLHL23Q8NBE8 558 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 LRRN4Q8WUT4 740 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 TRMT2BQ96GJ1 504 aaKnown RBP14.69□□□□□ -0.06
USP39-207ENST00000450066 PKNOX2Q96KN3 472 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 ZNF512Q96ME7 567 aaPredicted RBP14.69□□□□□ -0.06
USP39-207ENST00000450066 PHACTR1Q9C0D0 580 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 BRD8Q9H0E9 1235 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 CDC42EP4Q9H3Q1 356 aaKnown RBP14.69□□□□□ -0.06
USP39-207ENST00000450066 PRDM12Q9H4Q4 367 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 CCSER2Q9H7U1 834 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 SLC12A6Q9UHW9 1150 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 HS3ST4Q9Y661 456 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 ZNF840PA6NDX5 716 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 MOCS2O96007 188 aaPredicted RBP14.69□□□□□ -0.06
USP39-207ENST00000450066 IGLV3-27P01718 113 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 ATP2A2P16615 1042 aaKnown RBP14.69□□□□□ -0.06
USP39-207ENST00000450066 MX2P20592 715 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 BASP1P80723 227 aaKnown RBP14.69□□□□□ -0.06
USP39-207ENST00000450066 ZNF844Q08AG5 666 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 VEPH1Q14D04 833 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 CEP85LQ5SZL2 805 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 ARTNQ5T4W7 220 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 ACBD5Q5T8D3 534 aaPredicted RBP14.69□□□□□ -0.06
USP39-207ENST00000450066 ANKRD22Q5VYY1 191 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 RWDD4Q6NW29 188 aaKnown RBP14.69□□□□□ -0.06
USP39-207ENST00000450066 NPWQ8N729 165 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 OR2W6PQ8NHA6 318 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 TBC1D31Q96DN5 1066 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 BTN2A3PQ96KV6 586 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 CATSPERBQ9H7T0 1116 aa14.69□□□□□ -0.06
USP39-207ENST00000450066 XPO7Q9UIA9 1087 aaKnown RBP14.69□□□□□ -0.06
USP39-207ENST00000450066 GOLGA8KD6RF30 607 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 CHADO15335 359 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 TLL1O43897 1013 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 RNF40O75150 1001 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 STK10O94804 968 aaKnown RBP14.68□□□□□ -0.06
USP39-207ENST00000450066 TTC4O95801 387 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 VAV1P15498 845 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 AP1B1Q10567 949 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 MTA1Q13330 715 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 KCNJ11Q14654 390 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 KLHDC10Q6PID8 442 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 ATP6V0D2Q8N8Y2 350 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 CCNYQ8ND76 341 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 CCDC110Q8TBZ0 833 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 P2RY11Q96G91 374 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 KLC2Q9H0B6 622 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 RAB6BQ9NRW1 208 aa14.68□□□□□ -0.06
USP39-207ENST00000450066 DNAJC17Q9NVM6 304 aaKnown RBP14.68□□□□□ -0.06
USP39-207ENST00000450066 SLC12A8A0AV02 714 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 GOLGA6L10A6NI86 522 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 E9PAM4 449 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 CNPP09543 421 aaKnown RBP14.67□□□□□ -0.06
USP39-207ENST00000450066 SYN1P17600 705 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 ATP5C1P36542 298 aaKnown RBP14.67□□□□□ -0.06
USP39-207ENST00000450066 MAGEA6P43360 314 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 PPP3CCP48454 512 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 TUBP50607 506 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 IFFO1Q0D2I5 559 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 GALNT2Q10471 571 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 TAF12Q16514 161 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 HIF1AQ16665 826 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 PIK3R6Q5UE93 754 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 CENPUQ71F23 418 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 TAB3Q8N5C8 712 aaPredicted RBP14.67□□□□□ -0.06
USP39-207ENST00000450066 TRPM5Q9NZQ8 1165 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 DNMT3LQ9UJW3 386 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 HBS1LQ9Y450 684 aaKnown RBP14.67□□□□□ -0.06
USP39-207ENST00000450066 INSL5Q9Y5Q6 135 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 A0A0A0MRY4 1105 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 TCRBV7S3A2A0A539 114 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 TMEM63AO94886 807 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 MAGEA4P43358 317 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 EPHB3P54753 998 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 ARL4CP56559 192 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 PPIDQ08752 370 aaKnown RBP14.67□□□□□ -0.06
USP39-207ENST00000450066 TWF1Q12792 350 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 KYNUQ16719 465 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 HECTD3Q5T447 861 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 TP53INP2Q8IXH6 220 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 LZTR1Q8N653 840 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 NETO2Q8NC67 525 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 HDAC11Q96DB2 347 aa14.67□□□□□ -0.06
USP39-207ENST00000450066 SPATA13Q96N96 652 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms