RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 O00370 1275 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 ACSL4O60488 711 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 FBXO21O94952 628 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 MOCS3O95396 460 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 ASLP04424 464 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 CAPNS1P04632 268 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 C7P10643 843 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 TBX4P57082 545 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 DAOAP59103 153 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 NUCB2P80303 420 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 LRRC63Q05C16 580 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 LRMPQ12912 555 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 COBLL1Q53SF7 1204 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 PIK3R6Q5UE93 754 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 ANKRD40Q6AI12 368 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 TMEM270Q6UE05 265 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 USP30Q70CQ3 517 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 MFN1Q8IWA4 741 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 SMYD4Q8IYR2 804 aaPredicted RBP13.82□□□□□ -0.2
HMGB3-204ENST00000448905 FIBINQ8TAL6 211 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 SLC35F5Q8WV83 523 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 BIRC7Q96CA5 298 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 HSFY1Q96LI6 401 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 TRIM62Q9BVG3 475 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 ACE2Q9BYF1 805 aaPredicted RBP13.82□□□□□ -0.2
HMGB3-204ENST00000448905 STIM2Q9P246 746 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 PCDHB4Q9Y5E5 795 aa13.82□□□□□ -0.2
HMGB3-204ENST00000448905 PCNX2A6NKB5 2137 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 LRRC72A6NJI9 287 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 SART1O43290 800 aaKnown RBP13.81□□□□□ -0.2
HMGB3-204ENST00000448905 PCDHGA12O60330 932 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 ATXN1LP0C7T5 689 aaKnown RBP13.81□□□□□ -0.2
HMGB3-204ENST00000448905 NNMTP40261 264 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 RACK1P63244 317 aaKnown RBP13.81□□□□□ -0.2
HMGB3-204ENST00000448905 BNC1Q01954 994 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 ACAP1Q15027 740 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 PTPRNQ16849 979 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 MSANTD2Q6P1R3 559 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 BHLHA9Q7RTU4 235 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 ZNF366Q8N895 744 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 KDM1BQ8NB78 822 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 HJURPQ8NCD3 748 aaPredicted RBP13.81□□□□□ -0.2
HMGB3-204ENST00000448905 TTC17Q96AE7 1141 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 NT5C1BQ96P26 610 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 OMDQ99983 421 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 FBXL12Q9NXK8 326 aa13.81□□□□□ -0.2
HMGB3-204ENST00000448905 TPX2Q9ULW0 747 aaKnown RBP13.81□□□□□ -0.2
HMGB3-204ENST00000448905 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.81□□□□□ -0.2
HMGB3-204ENST00000448905 FAM47DPA6NHR8 397 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 PSMA7O14818 248 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 MSI1O43347 362 aaKnown RBP13.8□□□□□ -0.2
HMGB3-204ENST00000448905 LTFP02788 710 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 CDK4P11802 303 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 CD70P32970 193 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 PPP1R2P41236 205 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 RGS7P49802 495 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 CCT8P50990 548 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 PNOCQ13519 176 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 PKDCCQ504Y2 493 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 RNF219Q5W0B1 726 aaPredicted RBP13.8□□□□□ -0.2
HMGB3-204ENST00000448905 KIAA0895LQ68EN5 471 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 PMF1Q6P1K2 205 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 RFWD3Q6PCD5 774 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 C19orf48Q6RUI8 117 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 PPM1KQ8N3J5 372 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 SMARCE1Q969G3 411 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 SERPINB11Q96P15 392 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 PPP1R9BQ96SB3 815 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 RSPH9Q9H1X1 276 aaPredicted RBP13.8□□□□□ -0.2
HMGB3-204ENST00000448905 GOLPH3LQ9H4A5 285 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 SLC12A6Q9UHW9 1150 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 ZDHHC9Q9Y397 364 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 GPSM3Q9Y4H4 160 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 CEP83Q9Y592 693 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 WDFY3Q8IZQ1 3526 aa13.8□□□□□ -0.2
HMGB3-204ENST00000448905 GOLGA6L7A0A1B0GV03 622 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 TARSL2A2RTX5 802 aaKnown RBP13.79□□□□□ -0.2
HMGB3-204ENST00000448905 M0QYV0 167 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 KCNK3O14649 394 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 CAPN9O14815 690 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 VILLO15195 856 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 PMM2O15305 246 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 IGLV3-27P01718 113 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 SRPRAP08240 638 aaKnown RBP13.79□□□□□ -0.2
HMGB3-204ENST00000448905 ACADSBP45954 432 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 FMO5P49326 533 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 CDH18Q13634 790 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 HNRNPA1L2Q32P51 320 aaKnown RBP13.79□□□□□ -0.2
HMGB3-204ENST00000448905 CCDC40Q4G0X9 1142 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 SLC45A4Q5BKX6 768 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 CARNMT1Q8N4J0 409 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 PDCD7Q8N8D1 485 aaKnown RBP13.79□□□□□ -0.2
HMGB3-204ENST00000448905 BAHD1Q8TBE0 780 aaPredicted RBP13.79□□□□□ -0.2
HMGB3-204ENST00000448905 SLC35C1Q96A29 364 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 DHTKD1Q96HY7 919 aaPredicted RBP13.79□□□□□ -0.2
HMGB3-204ENST00000448905 CEP63Q96MT8 703 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 MIS12Q9H081 205 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 PABPC3Q9H361 631 aaKnown RBP13.79□□□□□ -0.2
HMGB3-204ENST00000448905 DKK4Q9UBT3 224 aa13.79□□□□□ -0.2
HMGB3-204ENST00000448905 TLR6Q9Y2C9 796 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms