RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 PIH1D2Q8WWB5 315 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 C1orf54Q8WWF1 131 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 C11orf24Q96F05 449 aaPredicted RBP9.12□□□□□ -0.95
NIPBL-202ENST00000448238 TBC1D22BQ9NU19 505 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 TRMT13Q9NUP7 481 aaKnown RBP9.12□□□□□ -0.95
NIPBL-202ENST00000448238 SLC9A8Q9Y2E8 581 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 AKR1B1P15121 316 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 ERCC2P18074 760 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 SCTRP47872 440 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 DEFA5Q01523 94 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 GALNT6Q8NCL4 622 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 OR52K2Q8NGK3 314 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 ITFG1Q8TB96 612 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 BSNDQ8WZ55 320 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 LIN37Q96GY3 246 aaPredicted RBP9.12□□□□□ -0.95
NIPBL-202ENST00000448238 SERAC1Q96JX3 654 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 CACNA1CQ13936 2221 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 SULT1B1O43704 296 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 FAM153BP0C7A2 387 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 DBTP11182 482 aaKnown RBP9.12□□□□□ -0.95
NIPBL-202ENST00000448238 SCN1BQ07699 218 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 COL23A1Q86Y22 540 aaPredicted RBP9.12□□□□□ -0.95
NIPBL-202ENST00000448238 FAM89AQ96GI7 184 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 MKLN1Q9UL63 735 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 NDUFAF1Q9Y375 327 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 H3BUI4 141 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 PCNAP12004 261 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 BMP3P12645 472 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 NOS2P35228 1153 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 DNAAF5Q86Y56 855 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 C4orf33Q8N1A6 199 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 TEX19Q8NA77 164 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 MCOLN3Q8TDD5 553 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 CCDC107Q8WV48 283 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 SLITRK1Q96PX8 696 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 PHF20Q9BVI0 1012 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 SAMSN1Q9NSI8 373 aaKnown RBP9.12□□□□□ -0.95
NIPBL-202ENST00000448238 ORC5O43913 435 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 CPSF4O95639 269 aaKnown RBP9.12□□□□□ -0.95
NIPBL-202ENST00000448238 CPA3P15088 417 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 MAGEA8P43361 318 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 DGCR6Q14129 220 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 DRAP1Q14919 205 aaPredicted RBP9.12□□□□□ -0.95
NIPBL-202ENST00000448238 LONRF1Q17RB8 773 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 VPS26BQ4G0F5 336 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 PABPC1LQ4VXU2 614 aaKnown RBP9.12□□□□□ -0.95
NIPBL-202ENST00000448238 KCTD4Q8WVF5 259 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 ACSBG1Q96GR2 724 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 PLEKHG4BQ96PX9 1271 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 LIMD1Q9UGP4 676 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 TTC34A8MYJ7 566 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 CRTAMO95727 393 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 HOXD10P28358 340 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 NR1H2P55055 460 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 RFX4Q33E94 735 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 IRGCQ6NXR0 463 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 FAM92BQ6ZTR7 304 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 ARMC8Q8IUR7 673 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 ZNF354BQ96LW1 612 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 TXN2Q99757 166 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 TIPINQ9BVW5 301 aa9.12□□□□□ -0.95
NIPBL-202ENST00000448238 F5H423 210 aaPredicted RBP9.11□□□□□ -0.95
NIPBL-202ENST00000448238 CENPCQ03188 943 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 PDIA6Q15084 440 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 ZNF589Q86UQ0 364 aaPredicted RBP9.11□□□□□ -0.95
NIPBL-202ENST00000448238 ZNF227Q86WZ6 799 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 KCNB2Q92953 911 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 RTKNQ9BST9 563 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 GNG13Q9P2W3 67 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 ITGB6P18564 788 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 GSTT1P30711 240 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 SULT1E1P49888 294 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 CCR4P51679 360 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 PTPRNQ16849 979 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 FLAD1Q8NFF5 587 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 OR14K1Q8NGZ2 314 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 C15orf40Q8WUR7 153 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 FIG4Q92562 907 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 NT5C1AQ9BXI3 368 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 KCTD10Q9H3F6 313 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 REXO2Q9Y3B8 237 aaKnown RBP9.11□□□□□ -0.95
NIPBL-202ENST00000448238 OR2AT4A6NND4 320 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 H3BNH8 94 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 OR1I1O60431 355 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 SCGB2A1O75556 95 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 DNTTP04053 509 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 CHMP24386 653 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 PTPN3P26045 913 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 PCSK1P29120 753 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 PTGISQ16647 500 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 GIPC3Q8TF64 312 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 BTBD9Q96Q07 612 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 C1QTNF7Q9BXJ2 289 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 TRIM9Q9C026 710 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 C19orf12Q9NSK7 152 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 SCAF11Q99590 1463 aaKnown RBP9.11□□□□□ -0.95
NIPBL-202ENST00000448238 CIB4A0PJX0 185 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 DDX3XO00571 662 aaKnown RBP eCLIP9.11□□□□□ -0.955e-11■■□□□ 12.2
NIPBL-202ENST00000448238 GPD1P21695 349 aa9.11□□□□□ -0.95
NIPBL-202ENST00000448238 ADD1P35611 737 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms